SRC=http://www.broadinstitute.org/~tamayo/ssGSEA/benchmarks/ATRT.gct

SUMMARY=Rhabdoid and non-rhabdoid brain tumors.

TASK=Identify AT/RT (Atypical teratoid rhabdoid tumor) among brain tumor samples.

SHORT=atypical teratoid rhabdoid tumor (AT/RT) among brain tumor samples.

ANOMALY=atypical rhabdoid tumors
NORMAL=non-rhabdoid tumors

TISSUE=brain tumor

PAPER=http://www.ncbi.nlm.nih.gov/pubmed/21076395
REFERENCE=jagani.nature10

BENCH=http://www.broadinstitute.org/~tamayo/ssGSEA/benchmarks/bench.2.R

> Benchmark 2: SNF5 loss (knockout) signature vs. rhabdoid and non 
rhabdoid brain tumors

Jagani Z, Mora-Blanco EL, Sansam CG, McKenna ES, Wilson B, et al. (2010) 
Loss of the tumor suppressor Snf5 leads to aberrant activation of the 
Hedgehog-Gli pathway. Nat Med 16: 1429-1433

### Benchmark 2: SNF5 loss (knockout) signature vs. rhabdoid and non rhabdoid brain tumors

SAMPLES=48 samples: RH_0,RH_1,RH_2,RH_5,RH_6,RH_7_1,RH_8,RH_9,A204,G401,TM87,NC_1,NC_2,NC_3,NC_5,NC_6,NC_7,NC_9,NC_11,NC_12,NC_13,NC_14,MD_67,MD_69,MD_83,MD_106,MD_138,MD_104,MD_141,MD_143,MD_146,MD_98,MD_125,MD_129_1,MD_131_1,MD_142_1,MD_145,MD_122,MD_127,MD_134,MD_136_2,MD_90,MD_135,MD_137_1,MD_270,MD_86_1,MD_89,MD_97