Datasetgse25507_collapsed_to_symbols.gse25507.gpl570.cls
#N_versus_Y.gse25507.gpl570.cls
#N_versus_Y_repos
Phenotypegse25507.gpl570.cls#N_versus_Y_repos
Upregulated in classN
GeneSetTRANSCRIPTION ELONGATION FROM RNA POLYMERASE II PROMOTER
Enrichment Score (ES)0.58077013
Normalized Enrichment Score (NES)1.7817864
Nominal p-value0.009784736
FDR q-value1.0
FWER p-Value0.956
Table: GSEA Results Summary



Fig 1: Enrichment plot: TRANSCRIPTION ELONGATION FROM RNA POLYMERASE II PROMOTER   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1POLR2EPOLR2E
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa460.2570.0508Yes
2GTF2H1GTF2H1
Entrez,  Source
general transcription factor IIH, polypeptide 1, 62kDa650.2450.1005Yes
3CCNT1CCNT1
Entrez,  Source
cyclin T15800.1700.1106Yes
4TAF4TAF4
Entrez,  Source
TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa5930.1700.1450Yes
5GTF2A1GTF2A1
Entrez,  Source
general transcription factor IIA, 1, 19/37kDa7320.1600.1712Yes
6SUPT4H1SUPT4H1
Entrez,  Source
suppressor of Ty 4 homolog 1 (S. cerevisiae)8180.1550.1990Yes
7TAF12TAF12
Entrez,  Source
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa8540.1530.2289Yes
8TAF4BTAF4B
Entrez,  Source
TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa8990.1510.2580Yes
9TAF1TAF1
Entrez,  Source
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa14710.1280.2566Yes
10CCNT2CCNT2
Entrez,  Source
cyclin T217580.1190.2672Yes
11GTF2H2GTF2H2
Entrez,  Source
general transcription factor IIH, polypeptide 2, 44kDa18150.1170.2886Yes
12GTF2E1GTF2E1
Entrez,  Source
general transcription factor IIE, polypeptide 1, alpha 56kDa18220.1170.3124Yes
13TCEB1TCEB1
Entrez,  Source
transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)18810.1150.3333Yes
14GTF2A2GTF2A2
Entrez,  Source
general transcription factor IIA, 2, 12kDa20200.1110.3496Yes
15GTF2H5GTF2H5
Entrez,  Source
general transcription factor IIH, polypeptide 520240.1110.3723Yes
16NCBP1NCBP1
Entrez,  Source
nuclear cap binding protein subunit 1, 80kDa21760.1070.3870Yes
17GTF2F2GTF2F2
Entrez,  Source
general transcription factor IIF, polypeptide 2, 30kDa22780.1040.4036Yes
18POLR2APOLR2A
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide A, 220kDa25360.0980.4113Yes
19POLR2KPOLR2K
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa27170.0940.4219Yes
20POLR2JPOLR2J
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa28730.0900.4330Yes
21CCNKCCNK
Entrez,  Source
cyclin K30090.0880.4445Yes
22POLR2FPOLR2F
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide F30550.0860.4601Yes
23TAF9BTAF9B
Entrez,  Source
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa30980.0850.4757Yes
24TAF2TAF2
Entrez,  Source
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa35460.0770.4698Yes
25ELLELL
Entrez,  Source
elongation factor RNA polymerase II35730.0760.4843Yes
26ERCC2ERCC2
Entrez,  Source
excision repair cross-complementing rodent repair deficiency, complementation group 2 (xeroderma pigmentosum D)37740.0720.4894Yes
27GTF2F1GTF2F1
Entrez,  Source
general transcription factor IIF, polypeptide 1, 74kDa39230.0690.4965Yes
28GTF2BGTF2B
Entrez,  Source
general transcription factor IIB39540.0690.5092Yes
29CCNHCCNH
Entrez,  Source
cyclin H40530.0670.5182Yes
30ELP4ELP4
Entrez,  Source
elongation protein 4 homolog (S. cerevisiae)41960.0640.5245Yes
31TCEB2TCEB2
Entrez,  Source
transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B)42760.0630.5336Yes
32POLR2LPOLR2L
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa45430.0580.5327Yes
33TAF10TAF10
Entrez,  Source
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa48260.0540.5301Yes
34TAF6TAF6
Entrez,  Source
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa48440.0540.5403Yes
35ELL3ELL3
Entrez,  Source
elongation factor RNA polymerase II-like 348760.0530.5498Yes
36SETD2SETD2
Entrez,  Source
SET domain containing 249060.0530.5592Yes
37TAF5TAF5
Entrez,  Source
TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa50020.0510.5651Yes
38POLR2CPOLR2C
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide C, 33kDa50540.0500.5731Yes
39ELP3ELP3
Entrez,  Source
elongation protein 3 homolog (S. cerevisiae)51070.0500.5808Yes
40TAF13TAF13
Entrez,  Source
TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa61470.0340.5373No
41TCEA1TCEA1
Entrez,  Source
transcription elongation factor A (SII), 161480.0340.5444No
42ADRM1ADRM1
Entrez,  Source
adhesion regulating molecule 165900.0290.5289No
43POLR2GPOLR2G
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide G66890.0280.5298No
44TCEB3TCEB3
Entrez,  Source
transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)66900.0280.5354No
45TAF9TAF9
Entrez,  Source
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa72250.0210.5137No
46NCBP2NCBP2
Entrez,  Source
nuclear cap binding protein subunit 2, 20kDa74150.0180.5082No
47CDK7CDK7
Entrez,  Source
cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)74650.0170.5094No
48TAF1LTAF1L
Entrez,  Source
TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa75270.0170.5099No
49TBPTBP
Entrez,  Source
TATA box binding protein78640.0130.4961No
50GTF2E2GTF2E2
Entrez,  Source
general transcription factor IIE, polypeptide 2, beta 34kDa88100.0010.4502No
51TAF11TAF11
Entrez,  Source
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa8968-0.0010.4428No
52TAF3TAF3
Entrez,  Source
TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa9308-0.0050.4273No
53CDK9CDK9
Entrez,  Source
cyclin-dependent kinase 9 (CDC2-related kinase)9804-0.0100.4053No
54POLR2IPOLR2I
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa9918-0.0110.4021No
55SUPT16HSUPT16H
Entrez,  Source
suppressor of Ty 16 homolog (S. cerevisiae)10599-0.0190.3729No
56POLR2BPOLR2B
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide B, 140kDa11503-0.0290.3350No
57CTDP1CTDP1
Entrez,  Source
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 111672-0.0310.3333No
58ERCC3ERCC3
Entrez,  Source
excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing)11903-0.0340.3291No
59POLR2DPOLR2D
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide D12363-0.0390.3147No
60SUPT5HSUPT5H
Entrez,  Source
suppressor of Ty 5 homolog (S. cerevisiae)12680-0.0420.3080No
61SSRP1SSRP1
Entrez,  Source
structure specific recognition protein 113082-0.0470.2981No
62IKBKAPIKBKAP
Entrez,  Source
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein13171-0.0480.3036No
63MNAT1MNAT1
Entrez,  Source
menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)13415-0.0500.3021No
64GTF2H4GTF2H4
Entrez,  Source
general transcription factor IIH, polypeptide 4, 52kDa13858-0.0550.2920No
65GTF2H3GTF2H3
Entrez,  Source
general transcription factor IIH, polypeptide 3, 34kDa14071-0.0580.2936No
66POLR2HPOLR2H
Entrez,  Source
polymerase (RNA) II (DNA directed) polypeptide H18231-0.1190.1156No
Table: GSEA details [plain text format]



Fig 2: TRANSCRIPTION ELONGATION FROM RNA POLYMERASE II PROMOTER   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: TRANSCRIPTION ELONGATION FROM RNA POLYMERASE II PROMOTER: Random ES distribution   
Gene set null distribution of ES for TRANSCRIPTION ELONGATION FROM RNA POLYMERASE II PROMOTER