Dataset | gse25507_collapsed_to_symbols.gse25507.gpl570.cls #N_versus_Y.gse25507.gpl570.cls #N_versus_Y_repos |
Phenotype | gse25507.gpl570.cls#N_versus_Y_repos |
Upregulated in class | N |
GeneSet | VESICLE ORGANIZATION |
Enrichment Score (ES) | 0.44763428 |
Normalized Enrichment Score (NES) | 1.7373866 |
Nominal p-value | 0.005964215 |
FDR q-value | 1.0 |
FWER p-Value | 0.988 |
PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|
1 | RAB8A | RAB8A Entrez,  Source | RAB8A, member RAS oncogene family | 53 | 0.254 | 0.0203 | Yes |
2 | SEC24B | SEC24B Entrez,  Source | SEC24 related gene family, member B (S. cerevisiae) | 75 | 0.241 | 0.0410 | Yes |
3 | STXBP1 | STXBP1 Entrez,  Source | syntaxin binding protein 1 | 109 | 0.227 | 0.0598 | Yes |
4 | RAB34 | RAB34 Entrez,  Source | RAB34, member RAS oncogene family | 119 | 0.225 | 0.0797 | Yes |
5 | LYST | LYST Entrez,  Source | lysosomal trafficking regulator | 326 | 0.193 | 0.0870 | Yes |
6 | RAB1A | RAB1A Entrez,  Source | RAB1A, member RAS oncogene family | 364 | 0.189 | 0.1022 | Yes |
7 | STX6 | STX6 Entrez,  Source | syntaxin 6 | 405 | 0.184 | 0.1169 | Yes |
8 | COPE | COPE Entrez,  Source | coatomer protein complex, subunit epsilon | 451 | 0.180 | 0.1309 | Yes |
9 | CHMP5 | CHMP5 Entrez,  Source | chromatin modifying protein 5 | 508 | 0.176 | 0.1440 | Yes |
10 | CNIH3 | CNIH3 Entrez,  Source | cornichon homolog 3 (Drosophila) | 530 | 0.174 | 0.1586 | Yes |
11 | KIF13A | KIF13A Entrez,  Source | kinesin family member 13A | 574 | 0.171 | 0.1719 | Yes |
12 | F8 | F8 Entrez,  Source | coagulation factor VIII, procoagulant component (hemophilia A) | 610 | 0.169 | 0.1853 | Yes |
13 | CHMP2B | CHMP2B Entrez,  Source | chromatin modifying protein 2B | 646 | 0.166 | 0.1986 | Yes |
14 | ANKFY1 | ANKFY1 Entrez,  Source | ankyrin repeat and FYVE domain containing 1 | 877 | 0.152 | 0.2010 | Yes |
15 | SNX11 | SNX11 Entrez,  Source | sorting nexin 11 | 1017 | 0.146 | 0.2073 | Yes |
16 | NAPA | NAPA Entrez,  Source | N-ethylmaleimide-sensitive factor attachment protein, alpha | 1153 | 0.140 | 0.2133 | Yes |
17 | FCHO2 | FCHO2 Entrez,  Source | FCH domain only 2 | 1168 | 0.139 | 0.2251 | Yes |
18 | VPS4B | VPS4B Entrez,  Source | vacuolar protein sorting 4 homolog B (S. cerevisiae) | 1179 | 0.138 | 0.2371 | Yes |
19 | TRAPPC1 | TRAPPC1 Entrez,  Source | trafficking protein particle complex 1 | 1500 | 0.127 | 0.2329 | Yes |
20 | WASL | WASL Entrez,  Source | Wiskott-Aldrich syndrome-like | 1526 | 0.126 | 0.2430 | Yes |
21 | BET1 | BET1 Entrez,  Source | BET1 homolog (S. cerevisiae) | 1644 | 0.123 | 0.2483 | Yes |
22 | TMED2 | TMED2 Entrez,  Source | transmembrane emp24 domain trafficking protein 2 | 1660 | 0.122 | 0.2586 | Yes |
23 | VPS8 | VPS8 Entrez,  Source | vacuolar protein sorting 8 homolog (S. cerevisiae) | 1761 | 0.119 | 0.2644 | Yes |
24 | EEA1 | EEA1 Entrez,  Source | early endosome antigen 1, 162kD | 1775 | 0.118 | 0.2744 | Yes |
25 | TBPL1 | TBPL1 Entrez,  Source | TBP-like 1 | 1855 | 0.116 | 0.2810 | Yes |
26 | VPS37A | VPS37A Entrez,  Source | vacuolar protein sorting 37 homolog A (S. cerevisiae) | 1885 | 0.115 | 0.2900 | Yes |
27 | AP2S1 | AP2S1 Entrez,  Source | adaptor-related protein complex 2, sigma 1 subunit | 1900 | 0.114 | 0.2996 | Yes |
28 | CTSZ | CTSZ Entrez,  Source | cathepsin Z | 1915 | 0.114 | 0.3092 | Yes |
29 | TRAPPC6B | TRAPPC6B Entrez,  Source | trafficking protein particle complex 6B | 2088 | 0.109 | 0.3106 | Yes |
30 | CD59 | CD59 Entrez,  Source | CD59 molecule, complement regulatory protein | 2200 | 0.106 | 0.3147 | Yes |
31 | SEC23IP | SEC23IP Entrez,  Source | SEC23 interacting protein | 2236 | 0.105 | 0.3225 | Yes |
32 | SEC22B | SEC22B Entrez,  Source | SEC22 vesicle trafficking protein homolog B (S. cerevisiae) | 2353 | 0.102 | 0.3260 | Yes |
33 | RAB38 | RAB38 Entrez,  Source | RAB38, member RAS oncogene family | 2370 | 0.102 | 0.3344 | Yes |
34 | CHMP4C | CHMP4C Entrez,  Source | chromatin modifying protein 4C | 2373 | 0.102 | 0.3435 | Yes |
35 | MCFD2 | MCFD2 Entrez,  Source | multiple coagulation factor deficiency 2 | 2386 | 0.102 | 0.3521 | Yes |
36 | SEC23A | SEC23A Entrez,  Source | Sec23 homolog A (S. cerevisiae) | 2569 | 0.097 | 0.3519 | Yes |
37 | TRAPPC5 | TRAPPC5 Entrez,  Source | trafficking protein particle complex 5 | 2577 | 0.097 | 0.3603 | Yes |
38 | COPB2 | COPB2 Entrez,  Source | coatomer protein complex, subunit beta 2 (beta prime) | 2672 | 0.095 | 0.3643 | Yes |
39 | CHMP4B | CHMP4B Entrez,  Source | chromatin modifying protein 4B | 2743 | 0.093 | 0.3693 | Yes |
40 | GOLPH3 | GOLPH3 Entrez,  Source | golgi phosphoprotein 3 (coat-protein) | 2810 | 0.092 | 0.3743 | Yes |
41 | PIK3C2A | PIK3C2A Entrez,  Source | phosphoinositide-3-kinase, class 2, alpha polypeptide | 2861 | 0.091 | 0.3800 | Yes |
42 | F5 | F5 Entrez,  Source | coagulation factor V (proaccelerin, labile factor) | 2973 | 0.088 | 0.3825 | Yes |
43 | TSG101 | TSG101 Entrez,  Source | tumor susceptibility gene 101 | 3207 | 0.084 | 0.3787 | Yes |
44 | PAFAH1B1 | PAFAH1B1 Entrez,  Source | platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa | 3257 | 0.083 | 0.3837 | Yes |
45 | TGFA | TGFA Entrez,  Source | transforming growth factor, alpha | 3259 | 0.083 | 0.3911 | Yes |
46 | CHMP2A | CHMP2A Entrez,  Source | chromatin modifying protein 2A | 3267 | 0.083 | 0.3982 | Yes |
47 | SEC24D | SEC24D Entrez,  Source | SEC24 related gene family, member D (S. cerevisiae) | 3271 | 0.082 | 0.4055 | Yes |
48 | SEC24A | SEC24A Entrez,  Source | SEC24 related gene family, member A (S. cerevisiae) | 3273 | 0.082 | 0.4128 | Yes |
49 | TRAPPC3 | TRAPPC3 Entrez,  Source | trafficking protein particle complex 3 | 3326 | 0.081 | 0.4176 | Yes |
50 | SORT1 | SORT1 Entrez,  Source | sortilin 1 | 3436 | 0.079 | 0.4194 | Yes |
51 | SAR1B | SAR1B Entrez,  Source | SAR1 gene homolog B (S. cerevisiae) | 3437 | 0.079 | 0.4265 | Yes |
52 | HIP1 | HIP1 Entrez,  Source | huntingtin interacting protein 1 | 3508 | 0.078 | 0.4301 | Yes |
53 | SCFD1 | SCFD1 Entrez,  Source | sec1 family domain containing 1 | 3553 | 0.077 | 0.4349 | Yes |
54 | TRAPPC2 | TRAPPC2 Entrez,  Source | trafficking protein particle complex 2 | 3663 | 0.075 | 0.4362 | Yes |
55 | RILP | RILP Entrez,  Source | Rab interacting lysosomal protein | 3706 | 0.074 | 0.4408 | Yes |
56 | NSF | NSF Entrez,  Source | N-ethylmaleimide-sensitive factor | 3719 | 0.073 | 0.4468 | Yes |
57 | COPA | COPA Entrez,  Source | coatomer protein complex, subunit alpha | 3835 | 0.071 | 0.4476 | Yes |
58 | CHMP6 | CHMP6 Entrez,  Source | chromatin modifying protein 6 | 4123 | 0.066 | 0.4395 | No |
59 | KLHL12 | KLHL12 Entrez,  Source | kelch-like 12 (Drosophila) | 4252 | 0.063 | 0.4389 | No |
60 | CORO1A | CORO1A Entrez,  Source | coronin, actin binding protein, 1A | 4399 | 0.061 | 0.4373 | No |
61 | ZDHHC15 | ZDHHC15 Entrez,  Source | zinc finger, DHHC-type containing 15 | 4593 | 0.058 | 0.4331 | No |
62 | EPS15 | EPS15 Entrez,  Source | epidermal growth factor receptor pathway substrate 15 | 4840 | 0.054 | 0.4259 | No |
63 | AP3B1 | AP3B1 Entrez,  Source | adaptor-related protein complex 3, beta 1 subunit | 5011 | 0.051 | 0.4222 | No |
64 | PICALM | PICALM Entrez,  Source | phosphatidylinositol binding clathrin assembly protein | 5089 | 0.050 | 0.4229 | No |
65 | SERPINA1 | SERPINA1 Entrez,  Source | serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1 | 5209 | 0.048 | 0.4214 | No |
66 | VTI1A | VTI1A Entrez,  Source | vesicle transport through interaction with t-SNAREs homolog 1A (yeast) | 5239 | 0.048 | 0.4243 | No |
67 | TMED9 | TMED9 Entrez,  Source | transmembrane emp24 protein transport domain containing 9 | 5253 | 0.047 | 0.4279 | No |
68 | S100A10 | S100A10 Entrez,  Source | S100 calcium binding protein A10 | 5273 | 0.047 | 0.4312 | No |
69 | AP1M1 | AP1M1 Entrez,  Source | adaptor-related protein complex 1, mu 1 subunit | 5610 | 0.042 | 0.4185 | No |
70 | TRAPPC6A | TRAPPC6A Entrez,  Source | trafficking protein particle complex 6A | 5905 | 0.038 | 0.4076 | No |
71 | TMF1 | TMF1 Entrez,  Source | TATA element modulatory factor 1 | 5971 | 0.037 | 0.4077 | No |
72 | CSNK1D | CSNK1D Entrez,  Source | casein kinase 1, delta | 6013 | 0.036 | 0.4090 | No |
73 | PDCD6IP | PDCD6IP Entrez,  Source | programmed cell death 6 interacting protein | 6078 | 0.036 | 0.4091 | No |
74 | RAB1B | RAB1B Entrez,  Source | RAB1B, member RAS oncogene family | 6103 | 0.035 | 0.4110 | No |
75 | SNX19 | SNX19 Entrez,  Source | sorting nexin 19 | 6235 | 0.033 | 0.4076 | No |
76 | VPS28 | VPS28 Entrez,  Source | vacuolar protein sorting 28 homolog (S. cerevisiae) | 6342 | 0.032 | 0.4053 | No |
77 | VPS41 | VPS41 Entrez,  Source | vacuolar protein sorting 41 (yeast) | 6417 | 0.031 | 0.4045 | No |
78 | RAB20 | RAB20 Entrez,  Source | RAB20, member RAS oncogene family | 6493 | 0.030 | 0.4036 | No |
79 | CLCN3 | CLCN3 Entrez,  Source | chloride channel 3 | 6611 | 0.029 | 0.4004 | No |
80 | VPS37C | VPS37C Entrez,  Source | vacuolar protein sorting 37 homolog C (S. cerevisiae) | 6756 | 0.027 | 0.3958 | No |
81 | CAV2 | CAV2 Entrez,  Source | caveolin 2 | 6781 | 0.026 | 0.3970 | No |
82 | PVRL2 | PVRL2 Entrez,  Source | poliovirus receptor-related 2 (herpesvirus entry mediator B) | 6901 | 0.025 | 0.3934 | No |
83 | COPB1 | COPB1 Entrez,  Source | coatomer protein complex, subunit beta 1 | 6966 | 0.024 | 0.3924 | No |
84 | LRSAM1 | LRSAM1 Entrez,  Source | leucine rich repeat and sterile alpha motif containing 1 | 7109 | 0.022 | 0.3874 | No |
85 | SNX3 | SNX3 Entrez,  Source | sorting nexin 3 | 7158 | 0.021 | 0.3870 | No |
86 | CHMP1B | CHMP1B Entrez,  Source | chromatin modifying protein 1B | 7221 | 0.021 | 0.3858 | No |
87 | ZPBP2 | ZPBP2 Entrez,  Source | zona pellucida binding protein 2 | 7363 | 0.019 | 0.3806 | No |
88 | TFG | TFG Entrez,  Source | TRK-fused gene | 7392 | 0.018 | 0.3809 | No |
89 | TRAPPC2L | TRAPPC2L Entrez,  Source | trafficking protein particle complex 2-like | 7747 | 0.014 | 0.3649 | No |
90 | FOLR1 | FOLR1 Entrez,  Source | folate receptor 1 (adult) | 7856 | 0.013 | 0.3608 | No |
91 | NKD2 | NKD2 Entrez,  Source | naked cuticle homolog 2 (Drosophila) | 8112 | 0.009 | 0.3491 | No |
92 | TGFBRAP1 | TGFBRAP1 Entrez,  Source | transforming growth factor, beta receptor associated protein 1 | 8131 | 0.009 | 0.3490 | No |
93 | VAPA | VAPA Entrez,  Source | VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa | 8166 | 0.008 | 0.3481 | No |
94 | TRAPPC4 | TRAPPC4 Entrez,  Source | trafficking protein particle complex 4 | 8180 | 0.008 | 0.3483 | No |
95 | SHROOM2 | SHROOM2 Entrez,  Source | shroom family member 2 | 8341 | 0.006 | 0.3410 | No |
96 | SEC31A | SEC31A Entrez,  Source | SEC31 homolog A (S. cerevisiae) | 8631 | 0.003 | 0.3272 | No |
97 | AREG | AREG Entrez,  Source | amphiregulin (schwannoma-derived growth factor) | 8706 | 0.002 | 0.3237 | No |
98 | DLG4 | DLG4 Entrez,  Source | discs, large homolog 4 (Drosophila) | 9121 | -0.003 | 0.3037 | No |
99 | GOLGA2 | GOLGA2 Entrez,  Source | golgi autoantigen, golgin subfamily a, 2 | 9199 | -0.004 | 0.3003 | No |
100 | VAPB | VAPB Entrez,  Source | VAMP (vesicle-associated membrane protein)-associated protein B and C | 9204 | -0.004 | 0.3004 | No |
101 | ARF1 | ARF1 Entrez,  Source | ADP-ribosylation factor 1 | 9245 | -0.004 | 0.2989 | No |
102 | FNBP1L | FNBP1L Entrez,  Source | formin binding protein 1-like | 9410 | -0.006 | 0.2914 | No |
103 | VPS37B | VPS37B Entrez,  Source | vacuolar protein sorting 37 homolog B (S. cerevisiae) | 9569 | -0.008 | 0.2843 | No |
104 | FCHO1 | FCHO1 Entrez,  Source | FCH domain only 1 | 9652 | -0.008 | 0.2811 | No |
105 | TMED10 | TMED10 Entrez,  Source | transmembrane emp24-like trafficking protein 10 (yeast) | 9658 | -0.009 | 0.2816 | No |
106 | PPP6C | PPP6C Entrez,  Source | protein phosphatase 6, catalytic subunit | 9978 | -0.012 | 0.2671 | No |
107 | LMAN1 | LMAN1 Entrez,  Source | lectin, mannose-binding, 1 | 10286 | -0.015 | 0.2535 | No |
108 | ANKRD28 | ANKRD28 Entrez,  Source | ankyrin repeat domain 28 | 10295 | -0.016 | 0.2545 | No |
109 | ABCA1 | ABCA1 Entrez,  Source | ATP-binding cassette, sub-family A (ABC1), member 1 | 10391 | -0.016 | 0.2513 | No |
110 | ARCN1 | ARCN1 Entrez,  Source | archain 1 | 10472 | -0.018 | 0.2490 | No |
111 | CUL3 | CUL3 Entrez,  Source | cullin 3 | 10774 | -0.021 | 0.2362 | No |
112 | LRMP | LRMP Entrez,  Source | lymphoid-restricted membrane protein | 10902 | -0.023 | 0.2320 | No |
113 | RAB32 | RAB32 Entrez,  Source | RAB32, member RAS oncogene family | 10908 | -0.023 | 0.2338 | No |
114 | GORASP1 | GORASP1 Entrez,  Source | golgi reassembly stacking protein 1, 65kDa | 11260 | -0.026 | 0.2190 | No |
115 | SPACA1 | SPACA1 Entrez,  Source | sperm acrosome associated 1 | 11271 | -0.026 | 0.2209 | No |
116 | ANXA2 | ANXA2 Entrez,  Source | annexin A2 | 11386 | -0.028 | 0.2179 | No |
117 | GBF1 | GBF1 Entrez,  Source | golgi-specific brefeldin A resistance factor 1 | 11953 | -0.034 | 0.1933 | No |
118 | VPS4A | VPS4A Entrez,  Source | vacuolar protein sorting 4 homolog A (S. cerevisiae) | 12218 | -0.037 | 0.1838 | No |
119 | PLA2G3 | PLA2G3 Entrez,  Source | phospholipase A2, group III | 12599 | -0.041 | 0.1689 | No |
120 | CNIH2 | CNIH2 Entrez,  Source | cornichon homolog 2 (Drosophila) | 12922 | -0.045 | 0.1572 | No |
121 | VPS39 | VPS39 Entrez,  Source | vacuolar protein sorting 39 (yeast) | 13059 | -0.046 | 0.1547 | No |
122 | COPZ1 | COPZ1 Entrez,  Source | coatomer protein complex, subunit zeta 1 | 13522 | -0.051 | 0.1368 | No |
123 | CHMP4A | CHMP4A Entrez,  Source | chromatin modifying protein 4A | 13561 | -0.052 | 0.1396 | No |
124 | RAB3A | RAB3A Entrez,  Source | RAB3A, member RAS oncogene family | 13812 | -0.055 | 0.1323 | No |
125 | VPS11 | VPS11 Entrez,  Source | vacuolar protein sorting 11 (yeast) | 13846 | -0.055 | 0.1356 | No |
126 | UNC13A | UNC13A Entrez,  Source | unc-13 homolog A (C. elegans) | 14212 | -0.059 | 0.1231 | No |
127 | TBC1D20 | TBC1D20 Entrez,  Source | TBC1 domain family, member 20 | 14663 | -0.065 | 0.1069 | No |
128 | VPS33B | VPS33B Entrez,  Source | vacuolar protein sorting 33B (yeast) | 15226 | -0.072 | 0.0859 | No |
129 | CTSC | CTSC Entrez,  Source | cathepsin C | 15317 | -0.073 | 0.0881 | No |
130 | ZPBP | ZPBP Entrez,  Source | zona pellucida binding protein | 15337 | -0.073 | 0.0937 | No |
131 | COL7A1 | COL7A1 Entrez,  Source | collagen, type VII, alpha 1 (epidermolysis bullosa, dystrophic, dominant and recessive) | 15720 | -0.078 | 0.0821 | No |
132 | PTPRN | PTPRN Entrez,  Source | protein tyrosine phosphatase, receptor type, N | 16337 | -0.087 | 0.0599 | No |
133 | GPR143 | GPR143 Entrez,  Source | G protein-coupled receptor 143 | 16600 | -0.091 | 0.0552 | No |
134 | GOSR2 | GOSR2 Entrez,  Source | golgi SNAP receptor complex member 2 | 16666 | -0.092 | 0.0604 | No |
135 | GRIA1 | GRIA1 Entrez,  Source | glutamate receptor, ionotropic, AMPA 1 | 16920 | -0.096 | 0.0566 | No |
136 | CAV1 | CAV1 Entrez,  Source | caveolin 1, caveolae protein, 22kDa | 17047 | -0.098 | 0.0593 | No |
137 | CD34 | CD34 Entrez,  Source | CD34 molecule | 17176 | -0.100 | 0.0620 | No |
138 | SEC24C | SEC24C Entrez,  Source | SEC24 related gene family, member C (S. cerevisiae) | 17684 | -0.108 | 0.0470 | No |
139 | PREB | PREB Entrez,  Source | prolactin regulatory element binding | 17766 | -0.110 | 0.0529 | No |
140 | VAMP4 | VAMP4 Entrez,  Source | vesicle-associated membrane protein 4 | 17900 | -0.112 | 0.0565 | No |
141 | STX5 | STX5 Entrez,  Source | syntaxin 5 | 18695 | -0.129 | 0.0293 | No |
142 | ARFGAP1 | ARFGAP1 Entrez,  Source | ADP-ribosylation factor GTPase activating protein 1 | 19414 | -0.149 | 0.0077 | No |
143 | SLC17A7 | SLC17A7 Entrez,  Source | solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7 | 19744 | -0.163 | 0.0063 | No |
144 | VPS37D | VPS37D Entrez,  Source | vacuolar protein sorting 37 homolog D (S. cerevisiae) | 20250 | -0.198 | -0.0006 | No |
145 | PLEKHF1 | PLEKHF1 Entrez,  Source | pleckstrin homology domain containing, family F (with FYVE domain) member 1 | 20255 | -0.199 | 0.0171 | No |