Genes in this set(70):
| Std. name | Sys. name | SGDID |
| SWC3 | YAL011W | S000000009 |
| HPC2 | YBR215W | S000000419 |
| SWC5 | YBR231C | S000000435 |
| AHC2 | YCR082W | S000000678 |
| VAC8 | YEL013W | S000000739 |
| | YEL033W | S000000759 |
| | YER139C | S000000941 |
| SPT2 | YER161C | S000000963 |
| SRB2 | YHR041C | S000001083 |
| THP2 | YHR167W | S000001210 |
| STB5 | YHR178W | S000001221 |
| APQ12 | YIL040W | S000001302 |
| PRK1 | YIL095W | S000001357 |
| MET18 | YIL128W | S000001390 |
| IST3 | YIR005W | S000001444 |
| PAN3 | YKL025C | S000001508 |
| | YKL118W | S000001601 |
| CTK1 | YKL139W | S000001622 |
| ELF1 | YKL160W | S000001643 |
| LST4 | YKL176C | S000001659 |
| DOA1 | YKL213C | S000001696 |
| SLM3 | YDL033C | S000002191 |
| THI3 | YDL080C | S000002238 |
| PMP3 | YDR276C | S000002684 |
| SWR1 | YDR334W | S000002742 |
| SPT3 | YDR392W | S000002800 |
| VPS72 | YDR485C | S000002893 |
| DST1 | YGL043W | S000003011 |
| SOH1 | YGL127C | S000003095 |
| | YGL149W | S000003117 |
| HOS2 | YGL194C | S000003162 |
| VID30 | YGL227W | S000003196 |
| TIM13 | YGR181W | S000003413 |
| | YGR182C | S000003414 |
| HIR3 | YJR140C | S000003901 |
| MMM1 | YLL006W | S000003929 |
| | YLR168C | S000004158 |
| MMR1 | YLR190W | S000004180 |
| QRI5 | YLR204W | S000004194 |
| | YLR269C | S000004259 |
| ORM2 | YLR350W | S000004342 |
| IKI3 | YLR384C | S000004376 |
| VMA6 | YLR447C | S000004439 |
| | YML012C-A | S000004474 |
| VPS71 | YML041C | S000004505 |
| PRM6 | YML047C | S000004510 |
| MSC1 | YML128C | S000004597 |
| MYO5 | YMR109W | S000004715 |
| MRPS8 | YMR158W | S000004767 |
| SSN8 | YNL025C | S000004970 |
| | YNL140C | S000005084 |
| | YNL198C | S000005142 |
| IES2 | YNL215W | S000005159 |
| SIN3 | YOL004W | S000005364 |
| HTZ1 | YOL012C | S000005372 |
| MDM38 | YOL027C | S000005387 |
| THP1 | YOL072W | S000005433 |
| HIR2 | YOR038C | S000005564 |
| DIA2 | YOR080W | S000005606 |
| LEO1 | YOR123C | S000005649 |
| RUD3 | YOR216C | S000005742 |
| TIM18 | YOR297C | S000005823 |
| SNU66 | YOR308C | S000005835 |
| PDE2 | YOR360C | S000005887 |
| SSN3 | YPL042C | S000005963 |
| LGE1 | YPL055C | S000005976 |
| SUR1 | YPL057C | S000005978 |
| ELP3 | YPL086C | S000006007 |
| MED1 | YPR070W | S000006274 |
| MDM35 | YKL053C-A | S000007243 |
Enriched GO terms in this set:
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.010 (27/139: SWC3; HPC2; SWC5; SRB2; THP2; APQ12; MET18; IST3; CTK1; SWR1; SPT3; VPS72; DST1; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SNU66; SSN3; ELP3; MED1)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p < 0.001 (22/67: SWC3; HPC2; SWC5; SRB2; THP2; MET18; SWR1; SPT3; VPS72; DST1; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; HIR2; LEO1; SSN3; ELP3; MED1)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.003 (40/240: SWC3; HPC2; SWC5; AHC2; SPT2; SRB2; THP2; STB5; MET18; IST3; PAN3; CTK1; ELF1; DOA1; SLM3; THI3; SWR1; SPT3; VPS72; DST1; SOH1; HOS2; HIR3; MMM1; QRI5; IKI3; VPS71; MSC1; SSN8; SIN3; HTZ1; THP1; HIR2; DIA2; LEO1; SNU66; SSN3; LGE1; ELP3; MED1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006350 (transcription) [p = 0.003 (23/100: HPC2; SPT2; SRB2; THP2; STB5; MET18; CTK1; ELF1; THI3; DST1; SOH1; HOS2; HIR3; IKI3; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SSN3; ELP3; MED1)]
"The synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006351 (transcription, DNA-dependent) [p = 0.003 (22/96: HPC2; SPT2; SRB2; THP2; MET18; CTK1; ELF1; THI3; DST1; SOH1; HOS2; HIR3; IKI3; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SSN3; ELP3; MED1)]
"The synthesis of RNA on a template of DNA."
GO:0006366 (transcription from RNA polymerase II promoter) [p < 0.001 (20/57: HPC2; SPT2; SRB2; THP2; MET18; ELF1; THI3; DST1; SOH1; HIR3; IKI3; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SSN3; ELP3; MED1)]
"The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs)."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.010 (27/139: SWC3; HPC2; SWC5; SRB2; THP2; APQ12; MET18; IST3; CTK1; SWR1; SPT3; VPS72; DST1; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SNU66; SSN3; ELP3; MED1)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0031981 (nuclear lumen) [p < 0.001 (22/75: SWC3; HPC2; SWC5; SRB2; THP2; MET18; SWR1; SPT3; VPS72; DST1; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; HIR2; LEO1; SSN3; ELP3; MED1)]
"The volume enclosed by the nuclear inner membrane."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.003 (40/240: SWC3; HPC2; SWC5; AHC2; SPT2; SRB2; THP2; STB5; MET18; IST3; PAN3; CTK1; ELF1; DOA1; SLM3; THI3; SWR1; SPT3; VPS72; DST1; SOH1; HOS2; HIR3; MMM1; QRI5; IKI3; VPS71; MSC1; SSN8; SIN3; HTZ1; THP1; HIR2; DIA2; LEO1; SNU66; SSN3; LGE1; ELP3; MED1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0016070 (RNA metabolic process) [p = 0.001 (27/121: HPC2; SPT2; SRB2; THP2; MET18; IST3; PAN3; CTK1; ELF1; SLM3; THI3; DST1; SOH1; HOS2; HIR3; QRI5; IKI3; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SNU66; SSN3; ELP3; MED1)]
"The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."
GO:0006354 (RNA elongation) [p < 0.001 (10/16: HPC2; SPT2; THP2; CTK1; ELF1; DST1; HIR3; THP1; HIR2; LEO1)]
"The extension of an RNA molecule after transcription initiation by the addition of ribonucleotides catalyzed by an RNA polymerase."
GO:0006368 (RNA elongation from RNA polymerase II promoter) [p = 0.001 (9/14: HPC2; SPT2; THP2; ELF1; DST1; HIR3; THP1; HIR2; LEO1)]
"The extension of an RNA molecule after transcription initiation at an RNA polymerase II-specific promoter by the addition of ribonucleotides catalyzed by RNA polymerase II."
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GO:0003674 (molecular_function)
"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions."
GO:0030528 (transcription regulator activity) [p = 0.001 (15/46: HPC2; SRB2; STB5; MET18; ELF1; THI3; SPT3; DST1; HIR3; SSN8; SIN3; HIR2; LEO1; SSN3; MED1)]
"Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.003 (40/240: SWC3; HPC2; SWC5; AHC2; SPT2; SRB2; THP2; STB5; MET18; IST3; PAN3; CTK1; ELF1; DOA1; SLM3; THI3; SWR1; SPT3; VPS72; DST1; SOH1; HOS2; HIR3; MMM1; QRI5; IKI3; VPS71; MSC1; SSN8; SIN3; HTZ1; THP1; HIR2; DIA2; LEO1; SNU66; SSN3; LGE1; ELP3; MED1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0016070 (RNA metabolic process) [p = 0.001 (27/121: HPC2; SPT2; SRB2; THP2; MET18; IST3; PAN3; CTK1; ELF1; SLM3; THI3; DST1; SOH1; HOS2; HIR3; QRI5; IKI3; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SNU66; SSN3; ELP3; MED1)]
"The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."
GO:0006396 (RNA processing) [p = 0.006 (10/25: SPT2; IST3; PAN3; CTK1; SLM3; DST1; QRI5; IKI3; SNU66; ELP3)]
"Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.010 (27/139: SWC3; HPC2; SWC5; SRB2; THP2; APQ12; MET18; IST3; CTK1; SWR1; SPT3; VPS72; DST1; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; THP1; HIR2; LEO1; SNU66; SSN3; ELP3; MED1)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p = 0.001 (20/64: SWC3; HPC2; SWC5; SRB2; THP2; SWR1; SPT3; VPS72; HOS2; HIR3; IKI3; VPS71; SSN8; SIN3; HTZ1; HIR2; LEO1; SSN3; ELP3; MED1)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0016585 (chromatin remodeling complex) [p = 0.006 (9/20: SWC3; HPC2; SWC5; SWR1; VPS72; HIR3; VPS71; HTZ1; HIR2)]
"Any complex that mediates dynamic changes in eukaryotic chromatin."
GO:0000812 (SWR1 complex) [p = 0.007 (5/6: SWC3; SWC5; SWR1; VPS72; VPS71)]
"A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits."
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