Genes in this set(36):
| Std. name | Sys. name | SGDID |
| SWC3 | YAL011W | S000000009 |
| GAL1 | YBR020W | S000000224 |
| HSL7 | YBR133C | S000000337 |
| SWC5 | YBR231C | S000000435 |
| SLM5 | YCR024C | S000000618 |
| SPT2 | YER161C | S000000963 |
| FYV4 | YHR059W | S000001101 |
| YNG2 | YHR090C | S000001132 |
| SFB3 | YHR098C | S000001140 |
| RPN10 | YHR200W | S000001243 |
| SSM4 | YIL030C | S000001292 |
| ELF1 | YKL160W | S000001643 |
| BUD27 | YFL023W | S000001871 |
| UBP6 | YFR010W | S000001906 |
| REF2 | YDR195W | S000002603 |
| SWR1 | YDR334W | S000002742 |
| EAF1 | YDR359C | S000002767 |
| SPT3 | YDR392W | S000002800 |
| VPS72 | YDR485C | S000002893 |
| RMD9 | YGL107C | S000003075 |
| NUT1 | YGL151W | S000003119 |
| SRB5 | YGR104C | S000003336 |
| PRE9 | YGR135W | S000003367 |
| ELP2 | YGR200C | S000003432 |
| | YJL046W | S000003582 |
| RAD26 | YJR035W | S000003796 |
| SPT8 | YLR055C | S000004045 |
| IKI3 | YLR384C | S000004376 |
| VPS71 | YML041C | S000004505 |
| PAH1 | YMR165C | S000004775 |
| ELP6 | YMR312W | S000004929 |
| YAF9 | YNL107W | S000005051 |
| RBL2 | YOR265W | S000005791 |
| ELP3 | YPL086C | S000006007 |
| ELP4 | YPL101W | S000006022 |
| SEM1 | YDR363W-A | S000007235 |
Enriched GO terms in this set:
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.008 (18/304: SWC3; SWC5; YNG2; SSM4; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p < 0.001 (17/135: SWC3; SWC5; YNG2; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.008 (18/304: SWC3; SWC5; YNG2; SSM4; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (17/127: SWC3; SWC5; YNG2; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0016585 (chromatin remodeling complex)
"Any complex that mediates dynamic changes in eukaryotic chromatin."
GO:0000812 (SWR1 complex) [p < 0.001 (6/7: SWC3; SWC5; SWR1; VPS72; VPS71; YAF9)]
"A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0016043 (cellular component organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cellular component; includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope."
GO:0006996 (organelle organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell."
GO:0051276 (chromosome organization and biogenesis)
"A process that is carried out at the cellular level that results in the formation, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information."
GO:0006325 (establishment and/or maintenance of chromatin architecture)
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0016568 (chromatin modification)
"The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure."
GO:0006338 (chromatin remodeling)
"Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation."
GO:0043044 (ATP-dependent chromatin remodeling) [p < 0.001 (6/13: SWC3; SWC5; SWR1; VPS72; VPS71; YAF9)]
"Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors."
GO:0043486 (histone exchange) [p < 0.001 (6/8: SWC3; SWC5; SWR1; VPS72; VPS71; YAF9)]
"The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.008 (18/304: SWC3; SWC5; YNG2; SSM4; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0031981 (nuclear lumen) [p < 0.001 (17/171: SWC3; SWC5; YNG2; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"The volume enclosed by the nuclear inner membrane."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.008 (25/568: SWC3; GAL1; SWC5; SPT2; FYV4; YNG2; ELF1; REF2; SWR1; EAF1; SPT3; VPS72; RMD9; NUT1; SRB5; ELP2; RAD26; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4; SEM1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0016070 (RNA metabolic process)
"The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."
GO:0006399 (tRNA metabolic process)
"The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established."
GO:0008033 (tRNA processing) [p = 0.008 (5/17: ELP2; IKI3; ELP6; ELP3; ELP4)]
"The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group."
GO:0006400 (tRNA modification) [p = 0.001 (5/14: ELP2; IKI3; ELP6; ELP3; ELP4)]
"The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0008152 (metabolic process)
"Processes that cause many of the chemical changes in living organisms, including anabolism and catabolism. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation."
GO:0043170 (macromolecule metabolic process)
"The chemical reactions and pathways involving macromolecules, large molecules including proteins, nucleic acids and carbohydrates."
GO:0043283 (biopolymer metabolic process) [p = 0.004 (29/737: SWC3; GAL1; SWC5; SPT2; FYV4; YNG2; RPN10; SSM4; ELF1; UBP6; REF2; SWR1; EAF1; SPT3; VPS72; RMD9; NUT1; SRB5; PRE9; ELP2; RAD26; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4; SEM1)]
"The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.008 (25/568: SWC3; GAL1; SWC5; SPT2; FYV4; YNG2; ELF1; REF2; SWR1; EAF1; SPT3; VPS72; RMD9; NUT1; SRB5; ELP2; RAD26; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4; SEM1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.008 (18/304: SWC3; SWC5; YNG2; SSM4; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (17/127: SWC3; SWC5; YNG2; REF2; SWR1; EAF1; SPT3; VPS72; SRB5; ELP2; SPT8; IKI3; VPS71; ELP6; YAF9; ELP3; ELP4)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0008023 (transcription elongation factor complex) [p = 0.009 (5/18: ELP2; IKI3; ELP6; ELP3; ELP4)]
"Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation."
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