Genes in this set(10):
| Std. name | Sys. name | SGDID |
| HIR1 | YBL008W | S000000104 |
| THI2 | YBR240C | S000000444 |
| LHP1 | YDL051W | S000002209 |
| BRE1 | YDL074C | S000002232 |
| DPB4 | YDR121W | S000002528 |
| ASF1 | YJL115W | S000003651 |
| SPT20 | YOL148C | S000005508 |
| HIR2 | YOR038C | S000005564 |
| LGE1 | YPL055C | S000005976 |
| HFI1 | YPL254W | S000006175 |
Enriched GO terms in this set:
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.007 (10/568: HIR1; THI2; LHP1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p < 0.001 (8/137: HIR1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p < 0.001 (8/137: HIR1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0006333 (chromatin assembly or disassembly) [p = 0.006 (5/66: HIR1; BRE1; DPB4; ASF1; HIR2)]
"The formation or destruction of chromatin structures."
GO:0031497 (chromatin assembly) [p = 0.003 (5/58: HIR1; BRE1; DPB4; ASF1; HIR2)]
"The assembly of DNA, histone proteins, and other associated proteins into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus."
GO:0006334 (nucleosome assembly) [p = 0.006 (3/9: HIR1; ASF1; HIR2)]
"The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA."
GO:0006336 (DNA replication-independent nucleosome assembly) [p = 0.001 (3/5: HIR1; ASF1; HIR2)]
"The formation of nucleosomes outside the context of DNA replication."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p = 0.001 (7/135: HIR1; LHP1; DPB4; ASF1; SPT20; HIR2; HFI1)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
---
GO:0003674 (molecular_function)
"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions."
GO:0005488 (binding)
"The selective, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule."
GO:0005515 (protein binding)
"Interacting selectively with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules)."
GO:0008134 (transcription factor binding) [p = 0.002 (4/20: HIR1; SPT20; HIR2; HFI1)]
"Interacting selectively with a transcription factor, any protein required to initiate or regulate transcription."
GO:0003712 (transcription cofactor activity) [p = 0.002 (4/19: HIR1; SPT20; HIR2; HFI1)]
"The function that links a sequence-specific transcription factor to the core RNA polymerase II complex but does not bind DNA itself."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.007 (10/568: HIR1; THI2; LHP1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p < 0.001 (8/137: HIR1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p < 0.001 (8/137: HIR1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0016568 (chromatin modification) [p = 0.007 (6/119: BRE1; DPB4; ASF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure."
GO:0016569 (covalent chromatin modification) [p = 0.002 (5/55: BRE1; ASF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups."
GO:0016570 (histone modification) [p = 0.002 (5/55: BRE1; ASF1; SPT20; LGE1; HFI1)]
"The covalent alteration of one or more amino acid residues within a histone protein."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0031981 (nuclear lumen) [p = 0.003 (7/171: HIR1; LHP1; DPB4; ASF1; SPT20; HIR2; HFI1)]
"The volume enclosed by the nuclear inner membrane."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p = 0.007 (6/127: HIR1; DPB4; ASF1; SPT20; HIR2; HFI1)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0016585 (chromatin remodeling complex)
"Any complex that mediates dynamic changes in eukaryotic chromatin."
GO:0005678 (chromatin assembly complex) [p = 0.006 (3/9: HIR1; ASF1; HIR2)]
"Any protein complex that acts in the formation of nucleosomes or higher order chromatin structure."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0043226 (organelle)
"Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane."
GO:0043227 (membrane-bound organelle)
"Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."
GO:0043231 (intracellular membrane-bound organelle)
"Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."
GO:0005634 (nucleus) [p = 0.007 (10/570: HIR1; THI2; LHP1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.007 (10/568: HIR1; THI2; LHP1; BRE1; DPB4; ASF1; SPT20; HIR2; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0016070 (RNA metabolic process) [p = 0.007 (8/290: HIR1; THI2; LHP1; BRE1; DPB4; ASF1; HIR2; HFI1)]
"The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p = 0.007 (6/127: HIR1; DPB4; ASF1; SPT20; HIR2; HFI1)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
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