Genes in this set(13):
| Std. name | Sys. name | SGDID |
| SWD1 | YAR003W | S000000064 |
| SWD3 | YBR175W | S000000379 |
| THI2 | YBR240C | S000000444 |
| PAF1 | YBR279W | S000000483 |
| HAT2 | YEL056W | S000000782 |
| RPN1 | YHR027C | S000001069 |
| BRE1 | YDL074C | S000002232 |
| RTF1 | YGL244W | S000003213 |
| CAF130 | YGR134W | S000003366 |
| CAF40 | YNL288W | S000005232 |
| SPT20 | YOL148C | S000005508 |
| LGE1 | YPL055C | S000005976 |
| HFI1 | YPL254W | S000006175 |
Enriched GO terms in this set:
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.002 (12/568: SWD1; SWD3; THI2; PAF1; HAT2; BRE1; RTF1; CAF130; CAF40; SPT20; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p < 0.001 (9/137: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p < 0.001 (9/137: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0016568 (chromatin modification) [p < 0.001 (9/119: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure."
GO:0016569 (covalent chromatin modification) [p < 0.001 (9/55: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups."
GO:0016570 (histone modification) [p < 0.001 (9/55: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The covalent alteration of one or more amino acid residues within a histone protein."
GO:0016571 (histone methylation) [p < 0.001 (6/16: SWD1; SWD3; PAF1; BRE1; RTF1; LGE1)]
"The modification of histones by addition of methyl groups."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p < 0.001 (9/135: SWD1; SWD3; PAF1; HAT2; RTF1; CAF130; CAF40; SPT20; HFI1)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.002 (12/568: SWD1; SWD3; THI2; PAF1; HAT2; BRE1; RTF1; CAF130; CAF40; SPT20; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006350 (transcription) [p < 0.001 (10/222: SWD1; SWD3; THI2; PAF1; HAT2; BRE1; RTF1; CAF130; CAF40; HFI1)]
"The synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006351 (transcription, DNA-dependent) [p < 0.001 (10/208: SWD1; SWD3; THI2; PAF1; HAT2; BRE1; RTF1; CAF130; CAF40; HFI1)]
"The synthesis of RNA on a template of DNA."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0031974 (membrane-enclosed lumen) [p = 0.001 (9/221: SWD1; SWD3; PAF1; HAT2; RTF1; CAF130; CAF40; SPT20; HFI1)]
"The enclosed volume within a sealed membrane or between two sealed membranes."
GO:0043233 (organelle lumen) [p = 0.001 (9/221: SWD1; SWD3; PAF1; HAT2; RTF1; CAF130; CAF40; SPT20; HFI1)]
"The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen."
GO:0031981 (nuclear lumen) [p < 0.001 (9/171: SWD1; SWD3; PAF1; HAT2; RTF1; CAF130; CAF40; SPT20; HFI1)]
"The volume enclosed by the nuclear inner membrane."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0043226 (organelle)
"Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane."
GO:0043227 (membrane-bound organelle)
"Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."
GO:0043231 (intracellular membrane-bound organelle)
"Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane."
GO:0005634 (nucleus) [p < 0.001 (13/570: SWD1; SWD3; THI2; PAF1; HAT2; RPN1; BRE1; RTF1; CAF130; CAF40; SPT20; LGE1; HFI1)]
"A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.002 (12/568: SWD1; SWD3; THI2; PAF1; HAT2; BRE1; RTF1; CAF130; CAF40; SPT20; LGE1; HFI1)]
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p < 0.001 (9/137: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p < 0.001 (9/137: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0016568 (chromatin modification) [p < 0.001 (9/119: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure."
GO:0016569 (covalent chromatin modification) [p < 0.001 (9/55: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The alteration of DNA or protein in chromatin by the covalent addition or removal of chemical groups."
GO:0016570 (histone modification) [p < 0.001 (9/55: SWD1; SWD3; PAF1; HAT2; BRE1; RTF1; SPT20; LGE1; HFI1)]
"The covalent alteration of one or more amino acid residues within a histone protein."
GO:0016574 (histone ubiquitination) [p < 0.001 (3/4: BRE1; RTF1; LGE1)]
"The modification of histones by addition of ubiquitin groups."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (9/127: SWD1; SWD3; PAF1; HAT2; RTF1; CAF130; CAF40; SPT20; HFI1)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0005667 (transcription factor complex) [p = 0.005 (5/59: HAT2; CAF130; CAF40; SPT20; HFI1)]
"Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0065007 (biological regulation)
"Any process that modulates the frequency, rate or extent of any biological process, quality or function."
GO:0050789 (regulation of biological process)
"Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule."
GO:0019222 (regulation of metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism."
GO:0031323 (regulation of cellular metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances."
GO:0019219 (regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0045449 (regulation of transcription)
"Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006355 (regulation of transcription, DNA-dependent) [p = 0.005 (7/153: SWD1; SWD3; THI2; HAT2; BRE1; CAF130; CAF40)]
"Any process that modulates the frequency, rate or extent of DNA-dependent transcription."
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