Genes in this set(17):
| Std. name | Sys. name | SGDID |
| VPS29 | YHR012W | S000001054 |
| YAP1801 | YHR161C | S000001204 |
| VPS51 | YKR020W | S000001728 |
| GET3 | YDL100C | S000002258 |
| VPS54 | YDR027C | S000002434 |
| RAV2 | YDR202C | S000002610 |
| VPS52 | YDR484W | S000002892 |
| YAP1802 | YGR241C | S000003473 |
| VPS53 | YJL029C | S000003566 |
| PEP8 | YJL053W | S000003589 |
| RCY1 | YJL204C | S000003740 |
| RAV1 | YJR033C | S000003794 |
| MVP1 | YMR004W | S000004606 |
| STV1 | YMR054W | S000004658 |
| YIP3 | YNL044W | S000004989 |
| VPS5 | YOR069W | S000005595 |
| VPS17 | YOR132W | S000005658 |
Enriched GO terms in this set:
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (15/396: VPS29; YAP1801; VPS51; GET3; VPS54; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; MVP1; YIP3; VPS5; VPS17)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0006810 (transport) [p < 0.001 (15/387: VPS29; YAP1801; VPS51; GET3; VPS54; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; MVP1; YIP3; VPS5; VPS17)]
"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells."
GO:0016192 (vesicle-mediated transport) [p < 0.001 (14/164: VPS29; YAP1801; VPS51; GET3; VPS54; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; YIP3; VPS5; VPS17)]
"The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell."
GO:0016197 (endosome transport) [p < 0.001 (9/39: VPS29; VPS51; VPS54; VPS52; VPS53; PEP8; RAV1; VPS5; VPS17)]
"The directed movement of substances into, out of or mediated by an endosome, a membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation."
GO:0042147 (retrograde transport, endosome to Golgi) [p < 0.001 (8/14: VPS29; VPS51; VPS54; VPS52; VPS53; PEP8; VPS5; VPS17)]
"The directed movement of membrane bound vesicles from recycling endosomes back to the trans-Golgi network where they are recycled for further rounds of transport."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p = 0.007 (16/753: VPS29; YAP1801; VPS51; GET3; VPS54; RAV2; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; STV1; YIP3; VPS5; VPS17)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0044433 (cytoplasmic vesicle part) [p = 0.002 (4/12: VPS51; VPS54; VPS52; VPS53)]
"Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell."
GO:0000938 (GARP complex) [p < 0.001 (4/4: VPS51; VPS54; VPS52; VPS53)]
"A quatrefoil tethering complex required for retrograde traffic from the early endosome back to the late Golgi and biogenesis of cytoplasmic vesicles."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044425 (membrane part)
"Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins."
GO:0030904 (retromer complex) [p < 0.001 (4/5: VPS29; PEP8; VPS5; VPS17)]
"A conserved multimeric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. For example, the budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051179 (localization) [p < 0.001 (15/414: VPS29; YAP1801; VPS51; GET3; VPS54; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; MVP1; YIP3; VPS5; VPS17)]
"The processes by which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in a specific location."
GO:0051641 (cellular localization) [p = 0.001 (12/283: VPS29; VPS51; GET3; VPS54; VPS52; VPS53; PEP8; RAV1; MVP1; YIP3; VPS5; VPS17)]
"The processes by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0043226 (organelle)
"Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane."
GO:0031982 (vesicle) [p = 0.003 (5/28: VPS51; VPS54; VPS52; VPS53; YIP3)]
"Any small, fluid-filled, spherical organelle enclosed by membrane or protein."
GO:0031988 (membrane-bound vesicle) [p = 0.003 (5/28: VPS51; VPS54; VPS52; VPS53; YIP3)]
"Any small, fluid-filled, spherical organelle enclosed by a lipid bilayer."
GO:0016023 (cytoplasmic membrane-bound vesicle) [p = 0.003 (5/28: VPS51; VPS54; VPS52; VPS53; YIP3)]
"A membrane-bound vesicle found in the cytoplasm of the cell."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p = 0.007 (16/753: VPS29; YAP1801; VPS51; GET3; VPS54; RAV2; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; STV1; YIP3; VPS5; VPS17)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0005794 (Golgi apparatus) [p = 0.004 (7/83: VPS51; VPS54; VPS52; VPS53; RCY1; STV1; YIP3)]
"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p = 0.007 (16/753: VPS29; YAP1801; VPS51; GET3; VPS54; RAV2; VPS52; YAP1802; VPS53; PEP8; RCY1; RAV1; STV1; YIP3; VPS5; VPS17)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0005768 (endosome) [p = 0.006 (6/58: VPS29; PEP8; RCY1; STV1; VPS5; VPS17)]
"A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation."
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