Genes in this set(13):
| Std. name | Sys. name | SGDID |
| SHP1 | YBL058W | S000000154 |
| SPT2 | YER161C | S000000963 |
| RPN10 | YHR200W | S000001243 |
| NUT1 | YGL151W | S000003119 |
| PRE9 | YGR135W | S000003367 |
| ELP2 | YGR200C | S000003432 |
| RPB4 | YJL140W | S000003676 |
| UBC12 | YLR306W | S000004297 |
| IKI3 | YLR384C | S000004376 |
| ELP6 | YMR312W | S000004929 |
| ELP3 | YPL086C | S000006007 |
| ELP4 | YPL101W | S000006022 |
| SEM1 | YDR363W-A | S000007235 |
Enriched GO terms in this set:
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0008152 (metabolic process)
"Processes that cause many of the chemical changes in living organisms, including anabolism and catabolism. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation."
GO:0043170 (macromolecule metabolic process)
"The chemical reactions and pathways involving macromolecules, large molecules including proteins, nucleic acids and carbohydrates."
GO:0043283 (biopolymer metabolic process) [p = 0.006 (13/737: SHP1; SPT2; RPN10; NUT1; PRE9; ELP2; RPB4; UBC12; IKI3; ELP6; ELP3; ELP4; SEM1)]
"The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins."
GO:0016070 (RNA metabolic process)
"The chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage."
GO:0006399 (tRNA metabolic process) [p < 0.001 (5/27: ELP2; IKI3; ELP6; ELP3; ELP4)]
"The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established."
GO:0008033 (tRNA processing) [p < 0.001 (5/17: ELP2; IKI3; ELP6; ELP3; ELP4)]
"The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group."
GO:0006400 (tRNA modification) [p < 0.001 (5/14: ELP2; IKI3; ELP6; ELP3; ELP4)]
"The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part)
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part)
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0008023 (transcription elongation factor complex) [p < 0.001 (5/18: ELP2; IKI3; ELP6; ELP3; ELP4)]
"Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006350 (transcription)
"The synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006351 (transcription, DNA-dependent)
"The synthesis of RNA on a template of DNA."
GO:0006366 (transcription from RNA polymerase II promoter) [p < 0.001 (8/133: SPT2; NUT1; ELP2; RPB4; IKI3; ELP6; ELP3; ELP4)]
"The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs)."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0065007 (biological regulation)
"Any process that modulates the frequency, rate or extent of any biological process, quality or function."
GO:0050789 (regulation of biological process)
"Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule."
GO:0019222 (regulation of metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism."
GO:0031323 (regulation of cellular metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances."
GO:0019219 (regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.003 (8/185: SPT2; NUT1; ELP2; RPB4; IKI3; ELP6; ELP3; ELP4)]
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0045449 (regulation of transcription)
"Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006355 (regulation of transcription, DNA-dependent)
"Any process that modulates the frequency, rate or extent of DNA-dependent transcription."
GO:0006357 (regulation of transcription from RNA polymerase II promoter) [p < 0.001 (7/89: SPT2; NUT1; ELP2; IKI3; ELP6; ELP3; ELP4)]
"Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0065007 (biological regulation)
"Any process that modulates the frequency, rate or extent of any biological process, quality or function."
GO:0050789 (regulation of biological process)
"Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule."
GO:0019222 (regulation of metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism."
GO:0031323 (regulation of cellular metabolic process)
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances."
GO:0019219 (regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process) [p = 0.003 (8/185: SPT2; NUT1; ELP2; RPB4; IKI3; ELP6; ELP3; ELP4)]
"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0008152 (metabolic process)
"Processes that cause many of the chemical changes in living organisms, including anabolism and catabolism. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation."
GO:0043170 (macromolecule metabolic process)
"The chemical reactions and pathways involving macromolecules, large molecules including proteins, nucleic acids and carbohydrates."
GO:0043283 (biopolymer metabolic process) [p = 0.006 (13/737: SHP1; SPT2; RPN10; NUT1; PRE9; ELP2; RPB4; UBC12; IKI3; ELP6; ELP3; ELP4; SEM1)]
"The chemical reactions and pathways involving biopolymers, long, repeating chains of monomers found in nature e.g. polysaccharides and proteins."
---