Genes in this set(123):
| Std. name | Sys. name | SGDID |
| VPS8 | YAL002W | S000000002 |
| PMT2 | YAL023C | S000000021 |
| BUD14 | YAR014C | S000000069 |
| SFT2 | YBL102W | S000000198 |
| RER1 | YCL001W | S000000507 |
| SRO9 | YCL037C | S000000542 |
| MAK31 | YCR020C-A | S000000614 |
| PER1 | YCR044C | S000000640 |
| GDA1 | YEL042W | S000000768 |
| | YEL043W | S000000769 |
| | YEL048C | S000000774 |
| VMA8 | YEL051W | S000000777 |
| MAK10 | YEL053C | S000000779 |
| | YER084W | S000000886 |
| SCS2 | YER120W | S000000922 |
| GLO3 | YER122C | S000000924 |
| RAD4 | YER162C | S000000964 |
| OPI1 | YHL020C | S000001012 |
| GOS1 | YHL031C | S000001023 |
| NEM1 | YHR004C | S000001046 |
| VPS29 | YHR012W | S000001054 |
| VMA22 | YHR060W | S000001102 |
| TED1 | YIL039W | S000001301 |
| AGE2 | YIL044C | S000001306 |
| SEC28 | YIL076W | S000001338 |
| VMA5 | YKL080W | S000001563 |
| TEF4 | YKL081W | S000001564 |
| VPH2 | YKL119C | S000001602 |
| VPS1 | YKR001C | S000001709 |
| IRS4 | YKR019C | S000001727 |
| VPS51 | YKR020W | S000001728 |
| GMH1 | YKR030W | S000001738 |
| RPL40B | YKR094C | S000001802 |
| RIM15 | YFL033C | S000001861 |
| BST1 | YFL025C | S000001869 |
| VMA10 | YHR039C-A | S000002100 |
| RPL2A | YFR031C-A | S000002104 |
| PTC1 | YDL006W | S000002164 |
| VAM6 | YDL077C | S000002235 |
| GET3 | YDL100C | S000002258 |
| RPL35A | YDL191W | S000002350 |
| VPS41 | YDR080W | S000002487 |
| | YDR107C | S000002514 |
| GSG1 | YDR108W | S000002515 |
| VPS61 | YDR136C | S000002543 |
| RGP1 | YDR137W | S000002544 |
| ENT5 | YDR153C | S000002560 |
| RAV2 | YDR202C | S000002610 |
| | YDR203W | S000002611 |
| SUM1 | YDR310C | S000002718 |
| SWA2 | YDR320C | S000002728 |
| VPS74 | YDR372C | S000002780 |
| ERD1 | YDR414C | S000002822 |
| COG7 | YGL005C | S000002973 |
| ERV14 | YGL054C | S000003022 |
| SNF4 | YGL115W | S000003083 |
| ZRT1 | YGL255W | S000003224 |
| VMA7 | YGR020C | S000003252 |
| CAX4 | YGR036C | S000003268 |
| UPF3 | YGR072W | S000003304 |
| VMA21 | YGR105W | S000003337 |
| APL6 | YGR261C | S000003493 |
| SYS1 | YJL004C | S000003541 |
| PEP8 | YJL053W | S000003589 |
| VPS35 | YJL154C | S000003690 |
| MNN11 | YJL183W | S000003719 |
| RAV1 | YJR033C | S000003794 |
| GEF1 | YJR040W | S000003801 |
| OPI3 | YJR073C | S000003834 |
| ENT4 | YLL038C | S000003961 |
| VPS13 | YLL040C | S000003963 |
| EMP70 | YLR083C | S000004073 |
| VPS63 | YLR261C | S000004251 |
| IMH1 | YLR309C | S000004300 |
| EST2 | YLR318W | S000004310 |
| VPS38 | YLR360W | S000004352 |
| VMA6 | YLR447C | S000004439 |
| YPT7 | YML001W | S000004460 |
| YMD8 | YML038C | S000004502 |
| COG8 | YML071C | S000004536 |
| MVP1 | YMR004W | S000004606 |
| | YMR010W | S000004612 |
| STV1 | YMR054W | S000004658 |
| PKR1 | YMR123W | S000004730 |
| SKY1 | YMR216C | S000004829 |
| SCS7 | YMR272C | S000004885 |
| RCE1 | YMR274C | S000004887 |
| COG6 | YNL041C | S000004986 |
| YIP3 | YNL044W | S000004989 |
| COG5 | YNL051W | S000004996 |
| RPL16B | YNL069C | S000005013 |
| FAR11 | YNL127W | S000005071 |
| PSD1 | YNL169C | S000005113 |
| KEX2 | YNL238W | S000005182 |
| | YNL296W | S000005240 |
| MON2 | YNL297C | S000005241 |
| TRF5 | YNL299W | S000005243 |
| PPG1 | YNR032W | S000005315 |
| TLG2 | YOL018C | S000005378 |
| INO4 | YOL108C | S000005468 |
| VAM10 | YOR068C | S000005594 |
| VPS5 | YOR069W | S000005595 |
| VAM3 | YOR106W | S000005632 |
| INP53 | YOR109W | S000005635 |
| CEX1 | YOR112W | S000005638 |
| RGA1 | YOR127W | S000005653 |
| VPS17 | YOR132W | S000005658 |
| RUD3 | YOR216C | S000005742 |
| GDH1 | YOR375C | S000005902 |
| EGD1 | YPL037C | S000005958 |
| SYH1 | YPL105C | S000006026 |
| VPS30 | YPL120W | S000006041 |
| BEM4 | YPL161C | S000006082 |
| APL5 | YPL195W | S000006116 |
| OXR1 | YPL196W | S000006117 |
| TFP3 | YPL234C | S000006155 |
| DSS4 | YPR017C | S000006221 |
| SRO7 | YPR032W | S000006236 |
| | YPR050C | S000006254 |
| MAK3 | YPR051W | S000006255 |
| MRL1 | YPR079W | S000006283 |
| | YPR084W | S000006288 |
| | YPR197C | S000006401 |
Enriched GO terms in this set:
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051179 (localization) [p < 0.001 (55/414: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; PTC1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; ERD1; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The processes by which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in a specific location."
GO:0051641 (cellular localization) [p < 0.001 (48/283: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; BST1; PTC1; GET3; GSG1; RGP1; ENT5; VPS74; ERD1; COG7; ERV14; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; IMH1; VPS38; VMA6; YPT7; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; VPS5; VAM3; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The processes by which a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (53/396: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0006810 (transport) [p < 0.001 (53/387: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells."
GO:0045045 (secretory pathway) [p < 0.001 (26/101: SFT2; RER1; GLO3; GOS1; AGE2; SEC28; BST1; GET3; GSG1; ENT5; COG7; ERV14; APL6; SYS1; IMH1; YPT7; COG8; COG6; YIP3; COG5; MON2; VAM3; RUD3; APL5; DSS4; SRO7)]
"The pathway along which proteins and other substances are moved around and out of the cell. After synthesis on the ribosomes of the endoplasmic reticulum (ER), completed polypeptide chains are moved to the Golgi complex and subsequently sorted to various destinations. Proteins synthesized and sorted in the secretory pathway include not only those that are secreted from the cell but also enzymes and other resident proteins in the lumen of the ER, Golgi, and lysosomes as well as integral proteins in the membranes of these organelles and the plasma membrane."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (53/396: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0046903 (secretion) [p < 0.001 (26/102: SFT2; RER1; GLO3; GOS1; AGE2; SEC28; BST1; GET3; GSG1; ENT5; COG7; ERV14; APL6; SYS1; IMH1; YPT7; COG8; COG6; YIP3; COG5; MON2; VAM3; RUD3; APL5; DSS4; SRO7)]
"The regulated release of a substance by a cell, a group of cells, or a tissue."
GO:0032940 (secretion by cell) [p < 0.001 (26/102: SFT2; RER1; GLO3; GOS1; AGE2; SEC28; BST1; GET3; GSG1; ENT5; COG7; ERV14; APL6; SYS1; IMH1; YPT7; COG8; COG6; YIP3; COG5; MON2; VAM3; RUD3; APL5; DSS4; SRO7)]
"The regulated release of a substance by a cell."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p < 0.001 (84/753: VPS8; PMT2; SFT2; RER1; MAK31; PER1; GDA1; [YEL043W]; VMA8; MAK10; SCS2; GLO3; OPI1; NEM1; VPS29; VMA22; TED1; SEC28; VMA5; TEF4; VPH2; VPS1; IRS4; VPS51; GMH1; RPL40B; BST1; VMA10; RPL2A; VAM6; GET3; RPL35A; VPS41; GSG1; RGP1; ENT5; RAV2; SWA2; COG7; ERV14; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; MNN11; RAV1; GEF1; OPI3; ENT4; VPS13; EMP70; IMH1; VMA6; YPT7; COG8; STV1; PKR1; SCS7; RCE1; COG6; YIP3; COG5; RPL16B; PSD1; KEX2; MON2; TLG2; VAM10; VPS5; VAM3; INP53; VPS17; RUD3; EGD1; SYH1; APL5; OXR1; TFP3; SRO7; MAK3; MRL1)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0005794 (Golgi apparatus) [p < 0.001 (23/83: SFT2; RER1; GDA1; GLO3; SEC28; VPS51; GMH1; GSG1; RGP1; COG7; ERV14; SYS1; MNN11; GEF1; IMH1; COG8; STV1; COG6; YIP3; COG5; KEX2; TLG2; RUD3)]
"A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p < 0.001 (84/753: VPS8; PMT2; SFT2; RER1; MAK31; PER1; GDA1; [YEL043W]; VMA8; MAK10; SCS2; GLO3; OPI1; NEM1; VPS29; VMA22; TED1; SEC28; VMA5; TEF4; VPH2; VPS1; IRS4; VPS51; GMH1; RPL40B; BST1; VMA10; RPL2A; VAM6; GET3; RPL35A; VPS41; GSG1; RGP1; ENT5; RAV2; SWA2; COG7; ERV14; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; MNN11; RAV1; GEF1; OPI3; ENT4; VPS13; EMP70; IMH1; VMA6; YPT7; COG8; STV1; PKR1; SCS7; RCE1; COG6; YIP3; COG5; RPL16B; PSD1; KEX2; MON2; TLG2; VAM10; VPS5; VAM3; INP53; VPS17; RUD3; EGD1; SYH1; APL5; OXR1; TFP3; SRO7; MAK3; MRL1)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0044431 (Golgi apparatus part) [p < 0.001 (19/60: SFT2; RER1; GLO3; SEC28; VPS51; GMH1; GSG1; RGP1; COG7; ERV14; SYS1; MNN11; GEF1; COG8; COG6; YIP3; COG5; KEX2; TLG2)]
"Any constituent part of the Golgi apparatus, a compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0065007 (biological regulation)
"Any process that modulates the frequency, rate or extent of any biological process, quality or function."
GO:0065008 (regulation of biological quality)
"Any process that modulates the frequency, rate or extent of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc."
GO:0042592 (homeostatic process)
"The biological processes involved in the maintenance of an internal equilibrium."
GO:0048878 (chemical homeostasis)
"The biological processes involved in the maintenance of an internal equilibrium of a chemical."
GO:0050801 (ion homeostasis)
"Any of the processes involved in the maintenance of an internal equilibrium of ions within an organism or cell."
GO:0055080 (cation homeostasis) [p = 0.001 (14/49: PER1; VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; GEF1; VMA6; STV1; SKY1; TFP3)]
"The regulation of the levels, transport, and metabolism of cations."
GO:0055067 (monovalent inorganic cation homeostasis) [p = 0.001 (11/28: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"The regulation of the levels, transport, and metabolism of monovalent inorganic cations."
GO:0006885 (regulation of pH) [p < 0.001 (11/23: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"Any process that modulates the internal pH of an organism, part of an organism or a cell, measured by the concentration of the hydrogen ion."
GO:0030641 (regulation of cellular pH) [p < 0.001 (11/22: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"The regulation of the levels, transport, and metabolism of hydrogen ions (protons) within a cell or between a cell and its external environment."
GO:0051453 (regulation of intracellular pH) [p < 0.001 (11/22: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion."
GO:0051452 (intracellular pH reduction) [p < 0.001 (11/21: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"Any process that reduces the internal pH of a cell, measured by the concentration of the hydrogen ion."
GO:0007035 (vacuolar acidification) [p < 0.001 (11/21: VMA8; VMA22; VMA5; VPH2; VMA10; RAV2; VMA7; RAV1; VMA6; STV1; TFP3)]
"Any process that reduces the pH of the vacuole, measured by the concentration of the hydrogen ion."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0016043 (cellular component organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cellular component; includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope."
GO:0006996 (organelle organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell."
GO:0007033 (vacuole organization and biogenesis) [p < 0.001 (15/46: VMA8; VMA22; VMA5; VPH2; VMA10; VAM6; VPS41; RAV2; VMA7; RAV1; VMA6; YPT7; STV1; VAM10; TFP3)]
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a vacuole."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0016020 (membrane) [p = 0.001 (50/375: SFT2; PER1; VMA8; SCS2; GLO3; OPI1; GOS1; NEM1; VPS29; VMA22; SEC28; VMA5; VPH2; VPS1; GMH1; BST1; VMA10; VAM6; VPS41; RGP1; ENT5; SWA2; ERD1; ERV14; SNF4; ZRT1; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; VMA6; YPT7; STV1; PKR1; SCS7; RCE1; PSD1; MON2; VAM10; VPS5; VAM3; VPS17; APL5; TFP3; SRO7)]
"Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins."
GO:0012505 (endomembrane system) [p = 0.001 (24/115: SFT2; SCS2; GLO3; OPI1; NEM1; VPS29; VMA22; SEC28; VPH2; GMH1; RGP1; ENT5; SWA2; ERV14; SNF4; CAX4; VMA21; SYS1; PEP8; VPS35; PKR1; RCE1; VPS5; VPS17)]
"A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles."
---
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044425 (membrane part) [p < 0.001 (41/225: SFT2; VMA8; SCS2; GLO3; GOS1; NEM1; VPS29; VMA22; SEC28; VMA5; VPH2; VPS1; GMH1; BST1; VMA10; VAM6; VPS41; RGP1; ENT5; SWA2; ERV14; ZRT1; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; VMA6; YPT7; STV1; PKR1; RCE1; MON2; VPS5; VPS17; APL5; TFP3)]
"Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins."
GO:0030904 (retromer complex) [p = 0.001 (5/5: VPS29; PEP8; VPS35; VPS5; VPS17)]
"A conserved multimeric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. For example, the budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p."
---
GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0016043 (cellular component organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of a cellular component; includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope."
GO:0006996 (organelle organization and biogenesis)
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any organelle within a cell."
GO:0016050 (vesicle organization and biogenesis) [p = 0.001 (6/8: GLO3; SEC28; VPS51; BST1; GSG1; SYS1)]
"A process that is carried out at the cellular level which results in the formation, arrangement of constituent parts, or disassembly of any vesicle."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051235 (maintenance of localization) [p = 0.001 (8/17: RER1; VPS1; BST1; ERD1; PEP8; VPS35; VPS13; VPS5)]
"The processes by which a cell, substance or cellular entity, such as a protein complex or organelle, is maintained in a location and prevented from moving elsewhere."
GO:0051651 (maintenance of cellular localization) [p = 0.001 (8/16: RER1; VPS1; BST1; ERD1; PEP8; VPS35; VPS13; VPS5)]
"The processes by which a substance or cellular entity, such as a protein complex or organelle, is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere."
GO:0032507 (maintenance of cellular protein localization) [p = 0.001 (8/16: RER1; VPS1; BST1; ERD1; PEP8; VPS35; VPS13; VPS5)]
"The processes by which a protein is maintained in a specific location within, or in the membrane of, a cell, and is prevented from moving elsewhere."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051235 (maintenance of localization) [p = 0.001 (8/17: RER1; VPS1; BST1; ERD1; PEP8; VPS35; VPS13; VPS5)]
"The processes by which a cell, substance or cellular entity, such as a protein complex or organelle, is maintained in a location and prevented from moving elsewhere."
GO:0045185 (maintenance of protein localization) [p = 0.001 (8/16: RER1; VPS1; BST1; ERD1; PEP8; VPS35; VPS13; VPS5)]
"The processes by which a protein is maintained in a location and prevented from moving elsewhere. These include sequestration, stabilization to prevent transport elsewhere and the active retrieval of proteins that do move away."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0005737 (cytoplasm) [p = 0.001 (96/1003: VPS8; PMT2; SFT2; RER1; MAK31; PER1; GDA1; [YEL043W]; VMA8; MAK10; SCS2; GLO3; OPI1; NEM1; VPS29; VMA22; TED1; SEC28; VMA5; TEF4; VPH2; VPS1; IRS4; VPS51; GMH1; RPL40B; RIM15; BST1; VMA10; RPL2A; PTC1; VAM6; GET3; RPL35A; VPS41; GSG1; RGP1; ENT5; RAV2; SWA2; VPS74; COG7; ERV14; SNF4; VMA7; CAX4; UPF3; VMA21; APL6; SYS1; PEP8; VPS35; MNN11; RAV1; GEF1; OPI3; ENT4; VPS13; EMP70; IMH1; VMA6; YPT7; COG8; MVP1; [YMR010W]; STV1; PKR1; SKY1; SCS7; RCE1; COG6; YIP3; COG5; RPL16B; PSD1; KEX2; MON2; PPG1; TLG2; VAM10; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; GDH1; EGD1; SYH1; BEM4; APL5; OXR1; TFP3; SRO7; MAK3; MRL1)]
"All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
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GO:0003674 (molecular_function)
"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions."
GO:0005215 (transporter activity)
"Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells."
GO:0022857 (transmembrane transporter activity)
"Catalysis of the transfer of a substance from one side of a membrane to the other."
GO:0022891 (substrate-specific transmembrane transporter activity)
"Catalysis of the transfer of a specific substance or group of related substances from one side of a membrane to the other."
GO:0015075 (ion transmembrane transporter activity)
"Catalysis of the transfer of an ion from one side of a membrane to the other."
GO:0008324 (cation transmembrane transporter activity)
"Catalysis of the transfer of cation from one side of the membrane to the other."
GO:0022890 (inorganic cation transmembrane transporter activity)
"Catalysis of the transfer of inorganic cations from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage."
GO:0015077 (monovalent inorganic cation transmembrane transporter activity)
"Catalysis of the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage."
GO:0015078 (hydrogen ion transmembrane transporter activity) [p = 0.003 (7/14: VMA8; VMA5; VMA10; VMA7; VMA6; STV1; TFP3)]
"Catalysis of the transfer of hydrogen ions from one side of a membrane to the other."
GO:0046961 (hydrogen ion transporting ATPase activity, rotational mechanism) [p = 0.002 (7/13: VMA8; VMA5; VMA10; VMA7; VMA6; STV1; TFP3)]
"Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044425 (membrane part) [p < 0.001 (41/225: SFT2; VMA8; SCS2; GLO3; GOS1; NEM1; VPS29; VMA22; SEC28; VMA5; VPH2; VPS1; GMH1; BST1; VMA10; VAM6; VPS41; RGP1; ENT5; SWA2; ERV14; ZRT1; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; VMA6; YPT7; STV1; PKR1; RCE1; MON2; VPS5; VPS17; APL5; TFP3)]
"Any constituent part of a membrane, a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins."
GO:0016469 (proton-transporting two-sector ATPase complex)
"A large protein complex that catalyzes the synthesis or hydrolysis of ATP by a rotational mechanism, coupled to the transport of protons across a membrane. The complex comprises a membrane sector (F0, V0, or A0) that carries out proton transport and a cytoplasmic compartment sector (F1, V1, or A1) that catalyzes ATP synthesis or hydrolysis. Two major types have been characterized: V-type ATPases couple ATP hydrolysis to the transport of protons across a concentration gradient, whereas F-type ATPases, also known as ATP synthases, normally run in the reverse direction to utilize energy from a proton concentration or electrochemical gradient to synthesize ATP. A third type, A-type ATPases have been found in archaea, and are closely related to eukaryotic V-type ATPases but are reversible."
GO:0033176 (proton-transporting V-type ATPase complex) [p = 0.003 (7/14: VMA8; VMA5; VMA10; VMA7; VMA6; STV1; TFP3)]
"A proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across a concentration gradient. The resulting transmembrane electrochemical potential of H+ is used to drive a variety of (i) secondary active transport systems via H+-dependent symporters and antiporters and (ii) channel-mediated transport systems. The complex comprises a membrane sector (V0) that carries out proton transport and a cytoplasmic compartment sector (V1) that catalyzes ATP hydrolysis. V-type ATPases are found in the membranes of organelles such as vacuoles, endosomes, and lysosomes, and in the plasma membrane."
GO:0016471 (vacuolar proton-transporting V-type ATPase complex) [p = 0.003 (7/14: VMA8; VMA5; VMA10; VMA7; VMA6; STV1; TFP3)]
"A proton-transporting two-sector ATPase complex found in the vacuolar membrane, where it acts as a proton pump to mediate acidification of the vacuolar lumen."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (53/396: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0006810 (transport) [p < 0.001 (53/387: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells."
GO:0016192 (vesicle-mediated transport) [p < 0.001 (39/164: VPS8; SFT2; RER1; GLO3; GOS1; VPS29; AGE2; SEC28; VPS51; BST1; GET3; GSG1; RGP1; ENT5; COG7; ERV14; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; YPT7; COG8; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; VPS17; RUD3; APL5; SRO7)]
"The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell."
GO:0016197 (endosome transport) [p < 0.001 (15/39: VPS8; SFT2; VPS29; VPS51; RGP1; ENT5; SYS1; PEP8; VPS35; RAV1; VPS13; VPS38; MON2; VPS5; VPS17)]
"The directed movement of substances into, out of or mediated by an endosome, a membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation."
GO:0042147 (retrograde transport, endosome to Golgi) [p = 0.003 (7/14: VPS29; VPS51; RGP1; PEP8; VPS35; VPS5; VPS17)]
"The directed movement of membrane bound vesicles from recycling endosomes back to the trans-Golgi network where they are recycled for further rounds of transport."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (53/396: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0006810 (transport) [p < 0.001 (53/387: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells."
GO:0016192 (vesicle-mediated transport) [p < 0.001 (39/164: VPS8; SFT2; RER1; GLO3; GOS1; VPS29; AGE2; SEC28; VPS51; BST1; GET3; GSG1; RGP1; ENT5; COG7; ERV14; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; YPT7; COG8; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; VPS17; RUD3; APL5; SRO7)]
"The directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell."
GO:0048193 (Golgi vesicle transport) [p < 0.001 (25/73: SFT2; RER1; GLO3; GOS1; AGE2; SEC28; BST1; GET3; GSG1; ENT5; COG7; ERV14; APL6; SYS1; IMH1; YPT7; COG8; COG6; YIP3; COG5; MON2; VAM3; RUD3; APL5; SRO7)]
"The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles."
GO:0006888 (ER to Golgi vesicle-mediated transport) [p = 0.005 (9/25: RER1; GLO3; AGE2; SEC28; BST1; GSG1; ERV14; YIP3; RUD3)]
"The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044464 (cell part)
"Any constituent part of a cell, the basic structural and functional unit of all organisms."
GO:0044424 (intracellular part)
"Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm."
GO:0044444 (cytoplasmic part) [p < 0.001 (84/753: VPS8; PMT2; SFT2; RER1; MAK31; PER1; GDA1; [YEL043W]; VMA8; MAK10; SCS2; GLO3; OPI1; NEM1; VPS29; VMA22; TED1; SEC28; VMA5; TEF4; VPH2; VPS1; IRS4; VPS51; GMH1; RPL40B; BST1; VMA10; RPL2A; VAM6; GET3; RPL35A; VPS41; GSG1; RGP1; ENT5; RAV2; SWA2; COG7; ERV14; VMA7; CAX4; VMA21; APL6; SYS1; PEP8; VPS35; MNN11; RAV1; GEF1; OPI3; ENT4; VPS13; EMP70; IMH1; VMA6; YPT7; COG8; STV1; PKR1; SCS7; RCE1; COG6; YIP3; COG5; RPL16B; PSD1; KEX2; MON2; TLG2; VAM10; VPS5; VAM3; INP53; VPS17; RUD3; EGD1; SYH1; APL5; OXR1; TFP3; SRO7; MAK3; MRL1)]
"Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures."
GO:0005768 (endosome) [p = 0.010 (14/58: VPS8; VPS29; VPS41; ENT5; PEP8; VPS35; GEF1; EMP70; STV1; MON2; TLG2; VPS5; VPS17; MRL1)]
"A membrane-bound organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0051234 (establishment of localization) [p < 0.001 (53/396: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; GMH1; BST1; GET3; VPS41; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; ZRT1; APL6; SYS1; PEP8; VPS35; RAV1; ENT4; VPS13; IMH1; VPS38; VMA6; YPT7; YMD8; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; TLG2; VPS5; VAM3; INP53; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location."
GO:0051649 (establishment of cellular localization) [p < 0.001 (46/268: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; BST1; GET3; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; IMH1; VPS38; VMA6; YPT7; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; VPS5; VAM3; CEX1; VPS17; RUD3; VPS30; APL5; DSS4; SRO7; MRL1)]
"The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell."
GO:0046907 (intracellular transport) [p < 0.001 (45/241: VPS8; SFT2; RER1; SCS2; GLO3; GOS1; VPS29; AGE2; SEC28; VPS1; VPS51; BST1; GET3; GSG1; RGP1; ENT5; VPS74; COG7; ERV14; APL6; SYS1; PEP8; VPS35; RAV1; VPS13; IMH1; VPS38; VMA6; YPT7; COG8; MVP1; SKY1; COG6; YIP3; COG5; MON2; VPS5; VAM3; CEX1; VPS17; RUD3; VPS30; APL5; SRO7; MRL1)]
"The directed movement of substances within a cell."
GO:0007034 (vacuolar transport) [p = 0.010 (15/66: VPS8; VPS1; VPS51; VPS74; APL6; VPS13; VPS38; VMA6; YPT7; MVP1; MON2; VAM3; VPS30; APL5; MRL1)]
"The directed movement of substances into, out of or within a vacuole."
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