Genes in this set(12):
| Std. name | Sys. name | SGDID |
| DEP1 | YAL013W | S000000011 |
| HHT1 | YBR010W | S000000214 |
| NAP1 | YKR048C | S000001756 |
| GCN20 | YFR009W | S000001905 |
| MED2 | YDL005C | S000002163 |
| NGG1 | YDR176W | S000002583 |
| PGD1 | YGL025C | S000002993 |
| PAC10 | YGR078C | S000003310 |
| SAP30 | YMR263W | S000004876 |
| HHT2 | YNL031C | S000004976 |
| GAL11 | YOL051W | S000005411 |
| CTI6 | YPL181W | S000006102 |
Enriched GO terms in this set:
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.003 (9/304: DEP1; HHT1; MED2; NGG1; PGD1; SAP30; HHT2; GAL11; CTI6)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p < 0.001 (7/135: DEP1; MED2; NGG1; PGD1; SAP30; GAL11; CTI6)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p < 0.001 (7/137: DEP1; HHT1; NAP1; NGG1; SAP30; HHT2; CTI6)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p < 0.001 (7/137: DEP1; HHT1; NAP1; NGG1; SAP30; HHT2; CTI6)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.003 (9/304: DEP1; HHT1; MED2; NGG1; PGD1; SAP30; HHT2; GAL11; CTI6)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (7/127: DEP1; MED2; NGG1; PGD1; SAP30; GAL11; CTI6)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0000119 (mediator complex) [p = 0.002 (3/9: MED2; PGD1; GAL11)]
"A protein complex that enables the RNA polymerase II-general RNA polymerase II transcription factor complex to react to transcriptional activator proteins; also enhances the level of basal transcription."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.003 (9/304: DEP1; HHT1; MED2; NGG1; PGD1; SAP30; HHT2; GAL11; CTI6)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (7/127: DEP1; MED2; NGG1; PGD1; SAP30; GAL11; CTI6)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0005667 (transcription factor complex)
"Any complex, distinct from RNA polymerase, including one or more polypeptides capable of binding DNA at promoters or at cis-acting regulatory sequences, and regulating transcription."
GO:0000118 (histone deacetylase complex)
"Complex that possesses histone deacetylase activity."
GO:0000508 (Rpd3L complex) [p = 0.002 (3/9: DEP1; SAP30; CTI6)]
"A multisubunit histone deacetylase complex that is involved in transcriptional regulation. In S. cerevisiae, this complex consists of Rpd3p, Sin3p, Ume1p, Pho23p, Sap30p, Sds3p, Cti6p, Rxt2p, Rxt3p, Dep1p, Ume6p and Ash1p."
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GO:0003674 (molecular_function)
"Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions."
GO:0030528 (transcription regulator activity)
"Plays a role in regulating transcription; may bind a promoter or enhancer DNA sequence or interact with a DNA-binding transcription factor."
GO:0003702 (RNA polymerase II transcription factor activity)
"Functions to initiate or regulate RNA polymerase II transcription."
GO:0016251 (general RNA polymerase II transcription factor activity)
"Any function that supports basal (unregulated) transcription of genes by core RNA polymerase II. Five general transcription factors are necessary and sufficient for such basal transcription in yeast: TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBF)."
GO:0016455 (RNA polymerase II transcription mediator activity) [p = 0.002 (3/9: MED2; PGD1; GAL11)]
"Functions to mediate the interaction of transcriptional activators with the RNA polymerase II-general RNA polymerase II transcription factor complex."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0032991 (macromolecular complex) [p = 0.006 (11/551: DEP1; HHT1; GCN20; MED2; NGG1; PGD1; PAC10; SAP30; HHT2; GAL11; CTI6)]
"A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together."
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