Genes in this set(57):
| Std. name | Sys. name | SGDID |
| SWC3 | YAL011W | S000000009 |
| GAL1 | YBR020W | S000000224 |
| HSL7 | YBR133C | S000000337 |
| SWC5 | YBR231C | S000000435 |
| MRPL37 | YBR268W | S000000472 |
| SLM5 | YCR024C | S000000618 |
| IES6 | YEL044W | S000000770 |
| SPT2 | YER161C | S000000963 |
| YNG2 | YHR090C | S000001132 |
| SFB3 | YHR098C | S000001140 |
| RPN10 | YHR200W | S000001243 |
| SSM4 | YIL030C | S000001292 |
| APQ12 | YIL040W | S000001302 |
| RSM25 | YIL093C | S000001355 |
| ELF1 | YKL160W | S000001643 |
| BUD27 | YFL023W | S000001871 |
| UBP6 | YFR010W | S000001906 |
| NHP10 | YDL002C | S000002160 |
| NAT1 | YDL040C | S000002198 |
| THI3 | YDL080C | S000002238 |
| REF2 | YDR195W | S000002603 |
| SWR1 | YDR334W | S000002742 |
| EAF1 | YDR359C | S000002767 |
| SPT3 | YDR392W | S000002800 |
| NPL3 | YDR432W | S000002840 |
| VPS72 | YDR485C | S000002893 |
| RPB9 | YGL070C | S000003038 |
| RMD9 | YGL107C | S000003075 |
| SPT4 | YGR063C | S000003295 |
| SRB5 | YGR104C | S000003336 |
| PRE9 | YGR135W | S000003367 |
| TIM13 | YGR181W | S000003413 |
| | YGR182C | S000003414 |
| ELP2 | YGR200C | S000003432 |
| | YJL046W | S000003582 |
| RAD26 | YJR035W | S000003796 |
| SPT8 | YLR055C | S000004045 |
| ARP6 | YLR085C | S000004075 |
| VPS34 | YLR240W | S000004230 |
| UBC12 | YLR306W | S000004297 |
| IKI3 | YLR384C | S000004376 |
| ATG17 | YLR423C | S000004415 |
| VPS71 | YML041C | S000004505 |
| PRM6 | YML047C | S000004510 |
| MTG1 | YMR097C | S000004703 |
| PAH1 | YMR165C | S000004775 |
| GUA1 | YMR217W | S000004830 |
| ELP6 | YMR312W | S000004929 |
| MSK1 | YNL073W | S000005017 |
| YAF9 | YNL107W | S000005051 |
| GCR2 | YNL199C | S000005143 |
| IES2 | YNL215W | S000005159 |
| HTZ1 | YOL012C | S000005372 |
| ELP3 | YPL086C | S000006007 |
| ELP4 | YPL101W | S000006022 |
| CTR1 | YPR124W | S000006328 |
| SEM1 | YDR363W-A | S000007235 |
Enriched GO terms in this set:
GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.002 (24/304: SWC3; SWC5; YNG2; SSM4; APQ12; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (22/127: SWC3; SWC5; YNG2; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0016585 (chromatin remodeling complex) [p = 0.001 (9/42: SWC3; SWC5; NHP10; SWR1; VPS72; ARP6; VPS71; YAF9; HTZ1)]
"Any complex that mediates dynamic changes in eukaryotic chromatin."
GO:0000812 (SWR1 complex) [p < 0.001 (7/7: SWC3; SWC5; SWR1; VPS72; ARP6; VPS71; YAF9)]
"A multisubunit protein complex that is involved in chromatin remodeling. It is required for the incorporation of the histone variant H2AZ into chromatin. In S. cerevisiae, the complex contains Swr1p, a Swi2/Snf2-related ATPase, and 12 additional subunits."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.002 (24/304: SWC3; SWC5; YNG2; SSM4; APQ12; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0005654 (nucleoplasm) [p < 0.001 (22/135: SWC3; SWC5; YNG2; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"That part of the nuclear content other than the chromosomes or the nucleolus."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p = 0.003 (15/137: SWC3; SWC5; SPT2; YNG2; ELF1; NHP10; SWR1; EAF1; SPT3; VPS72; SPT4; ARP6; VPS71; YAF9; HTZ1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p = 0.003 (15/137: SWC3; SWC5; SPT2; YNG2; ELF1; NHP10; SWR1; EAF1; SPT3; VPS72; SPT4; ARP6; VPS71; YAF9; HTZ1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
GO:0016568 (chromatin modification)
"The alteration of DNA or protein in chromatin, which may result in changing the chromatin structure."
GO:0006338 (chromatin remodeling)
"Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation."
GO:0043044 (ATP-dependent chromatin remodeling) [p < 0.001 (7/13: SWC3; SWC5; SWR1; VPS72; ARP6; VPS71; YAF9)]
"Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors."
GO:0043486 (histone exchange) [p < 0.001 (7/8: SWC3; SWC5; SWR1; VPS72; ARP6; VPS71; YAF9)]
"The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.002 (24/304: SWC3; SWC5; YNG2; SSM4; APQ12; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0031981 (nuclear lumen) [p < 0.001 (22/171: SWC3; SWC5; YNG2; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"The volume enclosed by the nuclear inner membrane."
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GO:0005575 (cellular_component)
"The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together."
GO:0044422 (organelle part)
"Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane."
GO:0044446 (intracellular organelle part)
"A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane."
GO:0044428 (nuclear part) [p = 0.002 (24/304: SWC3; SWC5; YNG2; SSM4; APQ12; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated."
GO:0044451 (nucleoplasm part) [p < 0.001 (22/127: SWC3; SWC5; YNG2; NHP10; REF2; SWR1; EAF1; SPT3; VPS72; RPB9; SPT4; SRB5; ELP2; SPT8; ARP6; IKI3; VPS71; ELP6; YAF9; HTZ1; ELP3; ELP4)]
"Any constituent part of the nucleoplasm, that part of the nuclear content other than the chromosomes or the nucleolus."
GO:0008023 (transcription elongation factor complex) [p = 0.002 (6/18: SPT4; ELP2; IKI3; ELP6; ELP3; ELP4)]
"Any protein complex that interacts with RNA polymerase II to increase (positive transcription elongation factor) or reduce (negative transcription elongation factor) the rate of transcription elongation."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006350 (transcription)
"The synthesis of either RNA on a template of DNA or DNA on a template of RNA."
GO:0006351 (transcription, DNA-dependent)
"The synthesis of RNA on a template of DNA."
GO:0006366 (transcription from RNA polymerase II promoter) [p = 0.002 (15/133: SPT2; ELF1; THI3; REF2; RPB9; SPT4; SRB5; ELP2; SPT8; IKI3; ELP6; GCR2; HTZ1; ELP3; ELP4)]
"The synthesis of RNA from a DNA template by RNA polymerase II (Pol II), originating at a Pol II-specific promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs)."
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GO:0008150 (biological_process)
"Those processes specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end."
GO:0009987 (cellular process)
"Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level."
GO:0044237 (cellular metabolic process)
"The chemical reactions and pathways by which individual cells transform chemical substances."
GO:0006139 (nucleobase, nucleoside, nucleotide and nucleic acid metabolic process)
"The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids."
GO:0006259 (DNA metabolic process)
"The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides."
GO:0006323 (DNA packaging) [p = 0.003 (15/137: SWC3; SWC5; SPT2; YNG2; ELF1; NHP10; SWR1; EAF1; SPT3; VPS72; SPT4; ARP6; VPS71; YAF9; HTZ1)]
"Any process by which DNA and associated proteins are formed into a compact, orderly structure."
GO:0006325 (establishment and/or maintenance of chromatin architecture) [p = 0.003 (15/137: SWC3; SWC5; SPT2; YNG2; ELF1; NHP10; SWR1; EAF1; SPT3; VPS72; SPT4; ARP6; VPS71; YAF9; HTZ1)]
"The specification, formation and maintenance of the physical structure of eukaryotic chromatin."
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