Module faread

source code

'faread.py' is a wrapper around 'faclient.py' that handles the nastiness of the data we get back.

Functions

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functionate(genes, modulecnt)
Sends a geneset to Funcassociate and returns its Go enrichment results.

source code

Variables

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__package__ = 'bpm'

Function Details

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functionate(genes, modulecnt)

source code

Sends a geneset to Funcassociate and returns its Go enrichment results.

Handles a lot of the nastiness of parsing the return results. Namely, using the entity attribute table to actually get the names of genes that correspond to each GO enrichment.

Parameters:

genes - A set of gene identifiers.
modulecnt - The total number of modules in the BPM file. This corresponds to the 'reps' (reptitions) Funcassociate parameter.