Package bpm :: Module faclient

Module faclient

A client class for the FuncAssociate web service at

http://llama.mshri.on.ca/cgi/funcassociate/serv

The documentation of the FuncAssociate API may be found at

http://llama.mshri.on.ca/funcassociate/doc

This module is distributed as "The Program" under the Harvard University End-User License Agreement. http://llama.mshri.on.ca/license.html.

Classes

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ServiceError
Exception raised when the response from server includes a non-null error.

NetworkError
Exception raised when server fails to respond to a ping request.

TimeoutError
Exception raised when response from the server fails to arrive within the prescribed time interval.

InputError
Exception raised by functionate method upon detecting bad inputs from user.

_fc

FuncassociateClient

Variables

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DEFAULT_SERVICE_HOST = 'http://llama.mshri.on.ca'

DEFAULT_SERVICE_URL = '/cgi/funcassociate/serv'

c = _fc()

response = c.functionate(query= ("YBL071W-A", "YCL055W", "YCR0...

headers = "N", "X", "LOD", "P", "P_adj", "attrib ID", "attrib ...

info = response ["request_info"]

reps = info ["reps"]

below_detection_threshhold = "< %f" %(1.0/ float(reps))

__package__ = 'bpm'

Variables Details

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response

Value:

c.functionate(query= ("YBL071W-A", "YCL055W", "YCR094W", "YDL127W", "Y
FL029C", "YGR271C-A", "YHR099W", "YJR066W", "YKL203C", "YNL289W"), spe
cies= "Saccharomyces cerevisiae", namespace= "sgd_systematic")

headers

Value:

"N", "X", "LOD", "P", "P_adj", "attrib ID", "attrib name"