Software from the BCB group

Predicting protein function and interactions through GLIDETOOLS

Human readable meta-data file format MEDFORD

BIRDccNEST: Interpretable single cell characterization with inferred directed cell networks

Inferring regulatory networks from single cell data with RegDiffusion and DAZZLE

Drug repositioning through Connectivity mapping with incomplete data.

You can find other useful tools at our github page.

Older BCB software packages include:

Multiple structure alignment with Matt

Interpreting transcriptomic anomalies with CSAX

Computing pathway centrality in PPI networks